Pairwise Alignments

Query, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

Subject, 1150 a.a., Type-1 restriction enzyme R protein from Alteromonas macleodii MIT1002

 Score =  146 bits (368), Expect = 7e-39
 Identities = 153/590 (25%), Positives = 263/590 (44%), Gaps = 100/590 (16%)

Query: 23  AGWDMHKQVREEVSFTKGRIMVRGKLHSRGE----ARRADFILYHQANLPIAVIEAKDNK 78
           AGW+      E + ++KG      K  +  E    +  AD+ L+    L +AV+EAK N 
Sbjct: 267 AGWEADT---ENLRYSKGARPEPNKNRAIAEWPTDSGPADYALFIGTTL-VAVVEAKKNA 322

Query: 79  HSVGSGMQQALGYAEALD---------------VPFVFSSNGDGFL--FHDRSG-----T 116
            +V   + QA  YA+ +                VP  F++NG  +L      SG      
Sbjct: 323 RNVYGAIDQAKRYAKGISSLADNIEVTEYGEFKVPLTFATNGRAYLKQLEQESGIWFLDV 382

Query: 117 DSKVETELSLDQFPSPAELWHRYCQWKGLDNAVQHKIEAPYYDDGSGRMPRYYQMNAINR 176
                   +L  + SP ++     Q     NA   ++   Y         R YQ  AI  
Sbjct: 383 RDTTNRRKALKGWYSPQKIKTYLRQTPQKANAQLDEMGFEYE-----LQLRDYQKKAIQS 437

Query: 177 TVEAVARGQDRVLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNILVDQ------ 230
             +A+   ++R L+ MATGTGKT T   +++RL K+++ +RILFL DR+ L  Q      
Sbjct: 438 VEQAIKDEKERALVAMATGTGKTKTCIALVYRLLKAERFRRILFLVDRSALGVQATIDFG 497

Query: 231 --------TKNNDFKPFGQAMTKIARRQIDTSYEIYLSLYQAVTGAEEEMNVYKQFSRDF 282
                   T  + F   G    K  +   D   +++++  Q +   +  M   +  ++  
Sbjct: 498 EVRMENLNTFADTFDVLGMEPEKNPKPTPDDDTKVHVATVQGLV--KRIMYPSEDATKPG 555

Query: 283 ---FDLIVIDECHRGSAAED----------------SAWREILGYFSNATHVGLTATPKE 323
              +D IV+DECHRG   +                 S +R ++ YF +A  +GLTATP  
Sbjct: 556 VGQYDCIVVDECHRGYLLDRELSETEVKFRDQQDYVSKYRAVIDYF-DAFKIGLTATPA- 613

Query: 324 TKEVSSITYFGEPVYSYTLKQGIEDGFLA----PYKV--------VRIDFDKDLQGWRPP 371
              + +   FG+PV+SY+  + + DG+L     P ++        +  + ++++Q + P 
Sbjct: 614 ---IHTTDIFGDPVFSYSYTEAVIDGYLVDHLPPVRIHTKLNTDGIHYNVNEEVQVYDPQ 670

Query: 372 KGMLDKNGELI---EDRIYNLKDMDRTLVIETRTQLVAQKVTEFLKASDPF--QKTIVFC 426
              L    ELI   ++  +++   +R ++    T+ +A+ + E   + DP+  +KT++FC
Sbjct: 671 TNQL----ELIHTPDELDFDVAQFNRKVIAPEFTKAIAKWLIES-DSIDPYSQEKTLIFC 725

Query: 427 DDINHAERMRQALVNLNPE-RVAENRKYVMRITGDDQEGKAELDNFINPEERYPVIATTS 485
               HA+ M +AL +       A +   +M+ITG   +    +  + N  +R P I  T 
Sbjct: 726 VTDKHADEMVEALKDACEHYHGAVDDDAIMKITGASDKPLQLIRRYKN--DRLPNIVVTV 783

Query: 486 KLMTTGVDAQTCKLIVLDQHIKSMTEFKQIIGRGTRINEDFGKYWFTIMD 535
            L+TTGVD  +   +V  + + S   ++Q++GR TR  +D  K  F I D
Sbjct: 784 DLLTTGVDVPSICNLVFMRRVNSRILYEQMLGRATRRCDDIAKERFRIYD 833