Pairwise Alignments

Query, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

Subject, 530 a.a., Transcription termination/antitermination protein NusA from Xanthobacter sp. DMC5

 Score =  418 bits (1075), Expect = e-121
 Identities = 215/486 (44%), Positives = 323/486 (66%), Gaps = 6/486 (1%)

Query: 4   EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
           E+L + ++V+ EK +   ++  A+E A+A A + R+  E D+  +IN  TG     R   
Sbjct: 10  ELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGQETDIHADINPRTGELRLARHLL 69

Query: 64  VVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
           VVDE  +++ A E  LD  +  +P A+VGD I + +   +FGRIAAQ+AKQVIVQKVREA
Sbjct: 70  VVDE--VENTATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQKVREA 127

Query: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183
           ER +  D Y++R+G++++G VK+V   NV+VDLG   E +L R++++PRET + G R+RA
Sbjct: 128 ERDRQYDEYKDRIGDVLNGLVKRVEYGNVVVDLGRG-EGILRRDELLPRETVKTGDRIRA 186

Query: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
            + ++R E RGPQ+ LSRT PQ + +LF  EVPEI +G++E+ A +RDPGSRAKIAV S+
Sbjct: 187 YIYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAVISR 246

Query: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
           D+ +DP GAC+GMRGSRVQAV  EL GE++DI+ W+ + A F++NA++PAEV  +++DED
Sbjct: 247 DQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVLDED 306

Query: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFIE 363
              +++ V +  L+ AIGR GQNVRLA+QLTGW +++MTE++   ++Q E  +  + F E
Sbjct: 307 RERIEVVVPDAQLSLAIGRRGQNVRLATQLTGWDIDIMTEQEESERRQKEFAERTKMFSE 366

Query: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
            L++DE + Q+L  EGFTS+EEIAYVP+ E+ +I+GFDED   EL++RA   L     A 
Sbjct: 367 ALDLDEMMGQLLTSEGFTSVEEIAYVPISELASIEGFDEDTAAELQSRALKHLAEVEEAL 426

Query: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEERAGKL 483
           + +  +    +++  + G+   +        +   EDLA  + DDL+   G  E + G+ 
Sbjct: 427 DARRKELGVEDEVKDVPGVTSKMLVAFGENDIKTVEDLAGCATDDLI---GWSERKDGET 483

Query: 484 IMAARA 489
           I  A A
Sbjct: 484 IRHAGA 489