Pairwise Alignments

Query, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

Subject, 524 a.a., Transcription termination protein NusA from Sphingobium sp. HT1-2

 Score =  400 bits (1029), Expect = e-116
 Identities = 220/514 (42%), Positives = 329/514 (64%), Gaps = 28/514 (5%)

Query: 4   EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
           E++ +  SV++EK +   ++ EA+E A+  A + R+  E D+R +++  +G     R W 
Sbjct: 11  ELIAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPDSGD---LRLWR 67

Query: 64  VVDEADL-DDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVRE 122
           VV+  ++ +D   +  L +      +A VGD I + + +I+ GRI AQ+AKQVI QKVR+
Sbjct: 68  VVEVVEVVEDYFKQVDLKQAAKLKKDAVVGDFIVDPLPAIDLGRIDAQSAKQVIFQKVRD 127

Query: 123 AERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLR 182
           AER +  D +++RVGEII+G VK V   +V+V+LG  AE ++ R+  IPRE  RVG R+R
Sbjct: 128 AERERQFDEFKDRVGEIITGVVKSVEFGHVVVNLGR-AEGVIRRDQQIPREVVRVGDRIR 186

Query: 183 ALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRS 242
           +++  +R ENRGPQ+ LSR  P+ + +LF  EVPEI +G+I +MAA+RDPGSRAKI V S
Sbjct: 187 SVVLNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVITIMAAARDPGSRAKIGVIS 246

Query: 243 KDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDE 302
           +D  IDP GAC+GM+GSRVQAV  E+ GE++DI+ W ++ A FV+NA+ PA+VA +++DE
Sbjct: 247 RDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVIDE 306

Query: 303 DAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFI 362
           +   +++ V +D L+ AIGR GQNVRLASQLTG  +++MTE D   K+Q E       F 
Sbjct: 307 EEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVSRSEMFQ 366

Query: 363 EELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIA 422
            EL+VDE L+Q+LV EGF  LEE+AYV +EE+  I+GFDED+  EL++RA++ L  +  A
Sbjct: 367 NELDVDETLSQLLVAEGFGELEEVAYVSVEELAGIEGFDEDLAAELQSRAQEALDRREQA 426

Query: 423 TEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLD---ID------ 473
             E+       + L  +  + + +   L   GV   +DLA+ + D+L+    +D      
Sbjct: 427 AREERQALGVEDALADMPHLTEAMLVTLGKAGVKTLDDLADLATDELVQKKRVDQRRRKS 486

Query: 474 --------------GIDEERAGKLIMAARAHWFE 493
                         G+ +E+  ++IMAARAHWFE
Sbjct: 487 DSGNEDKGGILAAYGLTDEQGNEIIMAARAHWFE 520