Pairwise Alignments

Query, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

Subject, 415 a.a., transcription termination factor NusA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  226 bits (577), Expect = 9e-64
 Identities = 135/406 (33%), Positives = 227/406 (55%), Gaps = 24/406 (5%)

Query: 13  SNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWTVVDEADLDD 72
           +  K V    +   LE       +K++E + +  V IN   G  E +R   +VD     D
Sbjct: 14  ARSKNVDRPTMIRILEDVFRAMIRKKYETDENFDVIINADKGDLEIWRIREIVD-----D 68

Query: 73  PAIETWLDKIKDTHPEAK-------VGDVIEEKIESIEFGRIAAQTAKQVIVQKVREAER 125
            + + W D  K +H EAK       +G+   E+IE  +FGR A   A+Q ++QK+++ E+
Sbjct: 69  NSEDIW-DHDKISHSEAKKIEPDFEIGEETYERIELEDFGRRAVMMARQTLIQKIKDLEK 127

Query: 126 AQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRALL 185
             +   Y E VGEII+  V ++    +++  G   E +L + + IP++ FR G  +R+++
Sbjct: 128 DLLFQQYEELVGEIITAEVYQILGREMLLMDGEGNELILPKGEQIPKDRFRKGDTIRSIV 187

Query: 186 KEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSKDK 245
            ++   N  P++ILSRT+P  L  LF  EVPE+ +GLI +    R+PG RAK+AV S D 
Sbjct: 188 HKVEMVNGNPRIILSRTSPIFLERLFENEVPEVYDGLITIKKIVREPGERAKVAVESYDD 247

Query: 246 RIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDEDAH 305
           RIDP GAC+GM+GSR+ AV  EL  E +D++ + DN   +V  A+SPA+V++I  +E+  
Sbjct: 248 RIDPVGACVGMKGSRIHAVVRELQNENIDVINYTDNLELYVSRALSPAKVSSIQANEEEK 307

Query: 306 AMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTE-KDIQAKQQAETGDILRNFIEE 364
            + + +  D ++ AIG+GG N+RLAS+L G+ ++V  E  D + ++  +    L  F +E
Sbjct: 308 RLSVFLKPDQVSLAIGKGGYNIRLASRLVGYEIDVFRELSDYEEEEDVD----LSEFSDE 363

Query: 365 LE--VDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNEL 408
           +E  + EEL +     G  + + +  +  E++      +E+ + E+
Sbjct: 364 IEGWIIEELKKT----GLDTAKSVLALSKEDLTRRTELEEETIEEI 405