Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 308 a.a., tRNA pseudouridine(55) synthase TruB from Rhodanobacter sp000427505 FW510-R12

 Score =  257 bits (656), Expect = 3e-73
 Identities = 142/288 (49%), Positives = 183/288 (63%), Gaps = 2/288 (0%)

Query: 9   RNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQY 68
           R++ GI+LLDKP G +SN ALQ VR LL A K GHTG+LDPLATG+LPLCFGEATK +  
Sbjct: 10  RDLHGIVLLDKPPGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGS 69

Query: 69  LLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVT-VGRADIEAVLPRFRGPISQIPPMYS 127
           LL + K Y    ++G TT+T D+EGEV+Q R V  +  A +EA L R RG I Q+PPMYS
Sbjct: 70  LLGARKAYLAECRLGVTTDTADSEGEVVQQRPVPELDDARVEAALARLRGRIQQVPPMYS 129

Query: 128 ALKRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLVEDI 187
           ALK+ G+ LY  AR GE VE   R V ++RLELL  EG   +L V C  GTY+R+L  D+
Sbjct: 130 ALKQGGERLYAKARRGETVELAPREVAVHRLELLAREGDTLQLLVECGSGTYVRSLAVDL 189

Query: 188 GEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDSGLQDWPL 247
           GE LGCGA++  LRR    PF   + VTL +LEQA AE G+EAL  +L+P  +GL D P+
Sbjct: 190 GEDLGCGAHLTALRRIWVEPFREPRMVTLTQLEQA-AEQGDEALLAWLLPVSAGLSDLPV 248

Query: 248 VSLSEHSAFYWLHGQAVRAPDAPQFGMVRVQDHNARFIGIGEVSEDGR 295
           + L E  +     GQ +  P  P+ G       +   + + E   +GR
Sbjct: 249 LRLDETQSMAISRGQQIALPGLPEVGHCAAYASDGALLALLEADAEGR 296