Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 368 a.a., tRNA pseudouridine synthase B from Xanthobacter sp. DMC5

 Score =  209 bits (532), Expect = 8e-59
 Identities = 126/298 (42%), Positives = 175/298 (58%), Gaps = 7/298 (2%)

Query: 8   RRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQ 67
           +R++ G +LLDKP G TS  A+  V+ +  A+KAGH G+LDPLA+G LP+ FGEATK   
Sbjct: 55  KRDLDGWVLLDKPTGMTSTQAVAVVKRIFGAKKAGHAGTLDPLASGCLPIAFGEATKTVP 114

Query: 68  YLLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPPMYS 127
           Y++D  K Y   ++ G  T+T D+EG+ ++T D+     +I A LP FRG I Q+PP YS
Sbjct: 115 YVMDGRKTYRFTVRFGVETDTDDSEGKAVETSDLRPSDDEIIAALPTFRGEIMQVPPAYS 174

Query: 128 ALKRDGQPLYKLARAGEVVEREARSVTINRLELLE-CEGTRARLSVGCSKGTYIRTLVED 186
           ALK  G+  Y LAR GE V+ EAR VTI R++L+E  +   A L   C KGTY+R +  D
Sbjct: 175 ALKIGGERAYDLAREGEEVKLEARPVTIFRIDLVERPDADHAVLEAECGKGTYVRAIARD 234

Query: 187 IGEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDSGLQDWP 246
           +G  LG   ++ +LRR   GPF   + V L+EL    AE   EAL   L P    L++ P
Sbjct: 235 LGRMLGSRGHICQLRRACVGPFLEERLVPLDELRD-RAEASEEALMDALDPVAVALEEIP 293

Query: 247 LVSLSEHSAFYWLHGQAV--RAPDAPQF-GMVRVQDHNARFIGIGEVSEDGRIAPRRL 301
            ++++   A     GQ++  R  DAP   G V V    A  I IG+  E+G + P R+
Sbjct: 294 QLNVTPQEAHRLRCGQSIILRGRDAPIVEGHVAVSCQGA-LIAIGD-GENGEVFPHRV 349