Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 321 a.a., tRNA pseudouridine(55) synthase (EC 5.4.99.25) from Variovorax sp. SCN45

 Score =  249 bits (635), Expect = 8e-71
 Identities = 150/300 (50%), Positives = 190/300 (63%), Gaps = 12/300 (4%)

Query: 8   RRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQ 67
           RR V G++LLDKPLG +SN ALQK +WLL AEKAGHTG+LDPLATGVLPLCFG ATKFSQ
Sbjct: 10  RRPVHGVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGAATKFSQ 69

Query: 68  YLLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPPMYS 127
             LD+DK YE   ++G  T TGDAEG+V+  R V V   D+  V  +F GPI Q+PPM+S
Sbjct: 70  LHLDADKTYEATARLGVKTATGDAEGDVIAERSVQVTPEDLARVEAQFTGPIRQVPPMHS 129

Query: 128 ALKRDGQPLYKLARAGEVVEREARSVTINRL--ELLECEGTRA-RLSVGCSKGTYIRTLV 184
           ALK+DG+ LY+ AR G  +ER  R V I++L  + +   G    R+    SKGTYIRTL 
Sbjct: 130 ALKKDGKALYEYAREGIEIERAPRDVVIHKLAIDTVGAIGDNVIRILATVSKGTYIRTLG 189

Query: 185 EDIGEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDSGLQD 244
           EDIGEALGCGA++  LRR   G F  AQ VTLE LE   A   +E L R L+P+++ +  
Sbjct: 190 EDIGEALGCGAHLTSLRRVATGDFVEAQCVTLEALE---AMDEDERLAR-LLPAEALVDG 245

Query: 245 WPLVSLSEHSAFYWLHGQAVRAP--DAPQFGMVRVQDHNARFIGIGEVSEDGRIAPRRLI 302
              V+L    A  +L G   R    DA +  +   +   A F+G   V+  G + P RL+
Sbjct: 246 HSRVTLGAEDAARFLSGLRRRGSWVDAGEVAVFGAEP--AAFLGTAHVTA-GELIPGRLL 302