Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 341 a.a., tRNA pseudouridine(55) synthase (EC 5.4.99.25) from Sphingobium sp. HT1-2

 Score =  176 bits (447), Expect = 5e-49
 Identities = 118/304 (38%), Positives = 156/304 (51%), Gaps = 57/304 (18%)

Query: 13  GIILLDKPLGFTSNAALQKVRWLLNAE----------KAGHTGSLDPLATGVLPLCFGEA 62
           G I+LDKP G  S  A+  V+  L  +          K GH G+LDPLATGVLP+  GEA
Sbjct: 3   GWIILDKPHGLGSTQAVSAVKRALRTQREVLGGTEKWKVGHGGTLDPLATGVLPIAIGEA 62

Query: 63  TKFSQYLLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQI 122
           TK +  +LDSDK Y+  +  G  T+T D EG+V+   +V    A +EA+LPRF GPI Q 
Sbjct: 63  TKLAGRMLDSDKIYDFTIAFGAQTDTLDLEGKVIAESEVRPTLAQLEAILPRFTGPIEQA 122

Query: 123 PPMYSALKRDGQPLYKLARAGEVVEREARSVTINRLELLEC-EGTRAR------------ 169
           PP YSA+  DGQ  Y LAR GE VE + RSVTI+ L L     GT +R            
Sbjct: 123 PPAYSAILIDGQRAYDLARKGEQVEMKTRSVTIHELFLPGTGRGTASRSDGVEGQAPLDM 182

Query: 170 -------------------------------LSVGCSKGTYIRTLVEDIGEALGCGAYVA 198
                                          L    SKGTYIR+L  DI  ALG   +V 
Sbjct: 183 TLEGQDRVGVPLHHASHGSPPRAGEELASVTLRAHVSKGTYIRSLARDIALALGTVGHVT 242

Query: 199 ELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDSGLQDWPLVSLSEHSAFYW 258
            LRR +AGPF L   ++L++L++A A GG+  +   ++P  +GL D P +++S   A   
Sbjct: 243 MLRRIKAGPFTLETAISLDKLDEA-ARGGD--IGELMLPLTAGLDDIPALAVSPDEALAL 299

Query: 259 LHGQ 262
             G+
Sbjct: 300 RQGK 303