Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 315 a.a., tRNA pseudouridine 55 synthase from Agrobacterium fabrum C58

 Score =  212 bits (540), Expect = 8e-60
 Identities = 122/300 (40%), Positives = 166/300 (55%), Gaps = 8/300 (2%)

Query: 9   RNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQY 68
           R +SG ++LDKPL F S  A+ K++WL NA+KAGH G+LDPLA+G+LP+  G+ATK   Y
Sbjct: 15  RPISGWLILDKPLDFGSTEAVSKIKWLFNAQKAGHAGTLDPLASGMLPIALGDATKTVPY 74

Query: 69  LLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPPMYSA 128
           ++D  K YE  +  G+   T D EGEV+++ D       I  +LP + G I Q PP +SA
Sbjct: 75  VMDGRKIYEFTVTWGEQRATDDLEGEVVESSDQRPEEQAIRDILPNYTGVIMQTPPQFSA 134

Query: 129 LKRDGQPLYKLARAGEVVEREARSVTINRLELLEC-EGTRARLSVGCSKGTYIRTLVEDI 187
           +K  G+  Y LAR GE VE  AR V I+RL LL C +   A   V C KGTY+R L  D+
Sbjct: 135 IKIAGERAYDLARDGETVEIPAREVEIHRLTLLACPDADTAHFEVECGKGTYVRALARDM 194

Query: 188 GEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHA----EGGNEALDRFLMPSDSGLQ 243
           G  LGC  +++ELRRT   PF     V LE L    A    +   EALD FL+ +   L 
Sbjct: 195 GRDLGCFGHISELRRTMVAPFGEDMMVPLETLTALEAIEDRDERLEALDAFLIDTAEALS 254

Query: 244 DWPLVSLSEHSAFYWLHGQAV--RAPDAPQFGMVRVQDHNARFIGIGEVSEDGRIAPRRL 301
             P + +++  A     G  +  R  DAP            + + IGE+ E G   P+R+
Sbjct: 255 SLPRLIINDDQAHRLKMGNPILLRGRDAPANHPEAYATAQGKLVAIGEIGE-GEFRPKRV 313