Pairwise Alignments

Query, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

Subject, 733 a.a., Exodeoxyribonuclease V alpha chain from Alteromonas macleodii MIT1002

 Score =  216 bits (549), Expect = 4e-60
 Identities = 212/693 (30%), Positives = 316/693 (45%), Gaps = 102/693 (14%)

Query: 70  ALASHQLGHGHVCLDLQ---------QTLAEPDFALSLPPE----GDALIGPLLLPSQLL 116
           A  S+   +GH C+ L+         + +AE + AL+          A    L L  Q  
Sbjct: 48  AYLSYMQRNGHSCIYLKDIAGTTLFKEVVAEQEAALAFETNEHSSNGAAAASLTLVEQTE 107

Query: 117 ANLDLNAWLQRISASPL---VAAGDTPGQQARPLVRSGERLYLRRYWSYERRIDQALRQR 173
                 A +     +PL   V +     Q A+  V S  +LY RRY+ +E+ + + + +R
Sbjct: 108 QEKAPKAGVDVPQLTPLLRIVKSALVNEQVAQLFVYSNGKLYSRRYYEFEQEVARNVVKR 167

Query: 174 LSQAEAPPAD-LPERLAQLFEGGAPA---GQVDWQKLACALATRAGFSIITGGPGTGKTT 229
              A  P +D   E++ QL+    P     + DWQ++A A +    F +I GGPGTGKT 
Sbjct: 168 A--ALTPLSDEASEKVKQLWPAIFPTETTDRQDWQQIAVAKSLMQRFCVINGGPGTGKTY 225

Query: 230 TVVRLLALLQAPAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQ--VSAEVRGQIPT 287
           TV+RLL  LQA        L+I LAAPTGKA  R+TESI   ++ L+  ++  V   +PT
Sbjct: 226 TVLRLLLALQAC----DENLKIVLAAPTGKAQQRMTESIMNSIDGLRGKLNDTVLNNVPT 281

Query: 288 EVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLL 347
           +  T+HRLLG R      + +  N L  DVL+VDEASM+DL +M  ++ ALP  ARL  +
Sbjct: 282 DAVTLHRLLGLREHGVSTKFNQHNQLAADVLIVDEASMVDLALMTRIVRALPDHARLYFI 341

Query: 348 GDKDQLASVEAGAVL------GDLCRDAEEGFYSPATAAW--LQQVSGESLAGSGLKAGD 399
           GD DQL +VE G VL      G  C D      +   +A   L   S +     G     
Sbjct: 342 GDADQLPAVELGNVLEQLVSTGPACFDDNANVPNGTNSAHSSLSLNSHDDAFSLGGVPSS 401

Query: 400 EQRH-----------PLAQQ----VVMLRFSRRFGEGSGIGQLARLVNRQDAHAARNLLA 444
            ++H           P+ +Q    V  L+  +RF     + ++A  + R DA  A     
Sbjct: 402 MRQHIATLCPHLPLLPVDEQAKSYVATLQAPQRF--KGQVAKVATAIQRGDASGA----- 454

Query: 445 APPADVHSLSLKHEQDRAFDRLLLDGLNRGTDGPQGYRSY--LRTLGRYRPALDTAFDDP 502
                   L+  ++Q  A D     G N  +    G   +  L+  GR    L      P
Sbjct: 455 --------LTAINDQADANDESAGLGSNTASRLQSGVHLWPELQVSGRDLQQLAKESFLP 506

Query: 503 AWEQW-AGKVLRSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAGLIDSQQPWYEGRPVL 561
            ++   A + L      + L  VR+G  GVEGLN  V   + +  +   +  +Y+G+P++
Sbjct: 507 IFDAGSAEEALNRLNVVRWLTPVRKGGMGVEGLNNLVFDAIKHK-IRKREGHFYQGQPIM 565

Query: 562 VTRNDYGLGLMNGDIGIALRLPDEHGQPLLRVAFPRNDGSG------------------- 602
           + +N +   L NG++G+    PD  G+ L    +  +  SG                   
Sbjct: 566 IVKNHHPQRLSNGEVGVI--WPDSKGK-LYAWFYQDSQASGQNGSSQKASANAGDSADKT 622

Query: 603 -----GVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLP----EALNPVLTKELVYT 653
                 +R +  SR+ + ETV+AMT+HKSQGSEF+H  L+LP    E    +  + LVYT
Sbjct: 623 LAQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNHVVLILPKPDSEKAANLFHRGLVYT 682

Query: 654 GITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686
           G+TRAK    L+      F   V R  +R SGL
Sbjct: 683 GLTRAKD-GCLIISDNATFTHMVQRVDKRYSGL 714