Pairwise Alignments

Query, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

Subject, 447 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rhodanobacter sp000427505 FW510-R12

 Score = 90.1 bits (222), Expect = 1e-22
 Identities = 60/182 (32%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 183 FTQPNGAVNQKMLSWAFEAIGEREDD-LLELYCGNGNFTLPLATRVRQVLATEISKTSVN 241
           F Q N  +NQ M++ A E +  +  D +L+L+CG GNFTLP+A RV +V+  E     V 
Sbjct: 276 FVQVNAGMNQLMMARAMELLDPQPTDRVLDLFCGLGNFTLPIARRVAEVVGVEGEHGLVE 335

Query: 242 AALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDPPRAGMD 301
            A  N   N + N               +    F      D     +  + +DPPRAG D
Sbjct: 336 RAAQNAARNGIANA------------CFHVANLFEDQRAADWAKQPWDKLLLDPPRAGAD 383

Query: 302 PDTCELT-RRFERILYISCNPETLAANIAQLQDTH--RIERCALFDQFPYTHHMESGVLL 358
                L  ++  RI+YISC+P +LA +   L + H  R+    + D FP+T H+ES  L 
Sbjct: 384 KLLDYLPHKQTRRIVYISCHPASLARDAGILVERHGFRLAAAGVMDMFPHTSHVESIALF 443

Query: 359 VR 360
            R
Sbjct: 444 ER 445