Pairwise Alignments

Query, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

Subject, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 85/315 (26%), Positives = 132/315 (41%), Gaps = 49/315 (15%)

Query: 53  REDGQRHYAMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLT 112
           R+ G R    FA  + H  + ID  P+ +  ++  +P  +A  +A   L   L     L 
Sbjct: 120 RQYGARTVVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLD----LQ 175

Query: 113 TLAGDAMITMCYHR--PLDEAWEVEARQLAEALGVSVIGRS-------KGKRLVIGRDYA 163
            +A D  + M      PL  A   +   +A+   ++ + R        +  RL +GR   
Sbjct: 176 LIATDTGLDMDVRGSGPLPPALLTDLAVIADRFRLARLTRHGELVIQREPPRLAMGR--- 232

Query: 164 VEKLDVAGRVFSYRQPEGAFTQPNGAVNQKMLSWAFEA--IGEREDDLLELYCGNGNFTL 221
             ++D+         P  AF Q   A  +++L+    A  +G R+  + +L+ G G F L
Sbjct: 233 -ARVDL---------PPAAFLQAT-AEGERVLADHVAAGMVGARK--VADLFAGVGTFAL 279

Query: 222 PLATRVRQVLATEISKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRR-LEG 280
            LA   R V A E       A  + L       ++ V   A +L         FRR L  
Sbjct: 280 RLAETAR-VFAAE---NHAGALAALLKAGHTPGLKGVDGEARDL---------FRRPLMA 326

Query: 281 IDLKSYQFGTVFVDPPRAGMDPDTCELT-RRFERILYISCNPETLAANIAQL-QDTHRIE 338
            +L +  F  V +DPPR G +    EL   R  R++Y+SCN  T A + A L     R+E
Sbjct: 327 AELAA--FDAVVIDPPRQGAEAQARELAVSRLPRLVYVSCNAATFARDAALLVAGGMRLE 384

Query: 339 RCALFDQFPYTHHME 353
                DQF Y+ H+E
Sbjct: 385 GVVPVDQFRYSAHVE 399