Pairwise Alignments

Query, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

Subject, 365 a.a., tRNA (uracil(54)-C(5))-methyltransferase from Alteromonas macleodii MIT1002

 Score =  342 bits (877), Expect = 9e-99
 Identities = 171/363 (47%), Positives = 240/363 (66%), Gaps = 6/363 (1%)

Query: 4   AFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHYAMF 63
           A +   Y  QLD KV RL  LL+PF AP+  VF S   HYR+RAEFR+W E     + MF
Sbjct: 3   AAEQQRYQAQLDEKVERLTALLSPFNAPDLTVFPSQPTHYRMRAEFRVWHEGDDLFHIMF 62

Query: 64  APGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMITMC 123
               K K   +D FP A + IN  M  L    + +E L  +LFQ+++L+ L+G+ +I++ 
Sbjct: 63  NQETKEK-YRVDSFPPACKAINDAMALLLKEVRPNEALRKKLFQIDYLSALSGELVISLL 121

Query: 124 YHRPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAVEKLDVAGRVFSYRQ 178
           YHR LDE W+  A++L   L      V++IGR++ ++L+I  D+ +E+L V G+ F ++ 
Sbjct: 122 YHRQLDEKWQKAAKELKAKLEAHFPKVNIIGRARKQKLIIDNDFVIERLPVNGKEFIFKH 181

Query: 179 PEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEISKT 238
            E +FTQPN  VN  M+ WA + +     DLLE+YCG GNF+LPLA     V+ TEI+K 
Sbjct: 182 IENSFTQPNAEVNCSMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKP 241

Query: 239 SVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDPPRA 298
           SV AA  N+++N ++NV++VRL+AEE TQA+   R F RLEGIDL +Y F TV VDPPRA
Sbjct: 242 SVQAAQFNIEQNQLNNVKIVRLAAEEFTQAMKGERTFSRLEGIDLSTYNFTTVLVDPPRA 301

Query: 299 GMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESGVLL 358
           G+D D+  + + ++ I+YISCNPETLA N+  L +TH + + ALFDQFP+THH+E+GVLL
Sbjct: 302 GLDEDSLRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLL 361

Query: 359 VRR 361
            R+
Sbjct: 362 TRK 364