Pairwise Alignments

Query, 456 a.a., DNA repair enzyme from Pseudomonas putida KT2440

Subject, 500 a.a., Circadian clock protein KaiC from Variovorax sp. SCN45

 Score = 48.9 bits (115), Expect = 4e-10
 Identities = 66/245 (26%), Positives = 99/245 (40%), Gaps = 44/245 (17%)

Query: 81  LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLC-NIAVGMPALYVTGEESQQQVAMRSR 139
           LD V  GGL  G V L+ G PG GK+T+ LQ L    ++G   LYVT  E+ +++A  + 
Sbjct: 21  LDDVTAGGLPGGHVYLVEGTPGAGKTTLGLQFLLQGRSLGQKGLYVTLSETSEELAQGAA 80

Query: 140 RLG-----------LPQDQLKVMTETCI---------ETI---IATARVEKPRVMVIDSI 176
             G           +  D L    E  I         ETI   +A    EKP  +V DS+
Sbjct: 81  SHGWDLAGVEIFDLVSDDDLSAEAEQSILQPSDFELGETIRGVMALVEREKPSRVVFDSL 140

Query: 177 QTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDT 236
                 +L+       + R     L R+  + G  + L   +  + + +G   L  +   
Sbjct: 141 -----SELRLLSQSSLRYRRQILALKRFFLKHGCTVLL---LDDKSAASGDMHLHSIAHG 192

Query: 237 VLYFE------GESDGRLRL--LRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRT 288
           V+  E      G    R+R+  LR V  R G  +    F +T  GL+  +   A    RT
Sbjct: 193 VIQLEQNTGTYGPDKRRMRVVKLRGVSFREGEHD----FTLTRGGLRVFTRLVANEHGRT 248

Query: 289 QEEVP 293
             + P
Sbjct: 249 HAQEP 253



 Score = 48.9 bits (115), Expect = 4e-10
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 23/204 (11%)

Query: 75  TTSSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTL-CNIAVGMPALYVTGEESQQQ 133
           ++ + +LDR+LGGGL  G+ +L  G  G+GK+T  +  +  ++ +G  A     +E  + 
Sbjct: 255 SSGNPDLDRLLGGGLTPGTNLLFAGPAGVGKTTTAVSCVRASLQLGGKAAIFLFDEGTKT 314

Query: 134 VAMRSRRLGLPQDQLKVMTETCIETI----IATAR--------VEKPRV--MVIDSIQTI 179
           +  RSR LG+  D+     +  + ++    I+  +        VE+  V  +VID++   
Sbjct: 315 LLTRSRALGMGIDEYIANGQLTLNSVDPAEISAGQFSHHVRDAVERQGVTTVVIDTLNA- 373

Query: 180 FTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVL- 238
               L + PG    + +   LL     Q  T I ++      G       L ++ D++L 
Sbjct: 374 ---YLVAMPGNNFLLLQMHELLTYLNLQGITTIVVLSQHGLTGETPNDVDLSYLSDSMLQ 430

Query: 239 --YFEGESDGRLRLLRAVKNRFGA 260
             YFE   +  L+ +  VK+R  A
Sbjct: 431 FRYFEARGE-LLKAVSVVKSRTSA 453