Pairwise Alignments

Query, 456 a.a., DNA repair enzyme from Pseudomonas putida KT2440

Subject, 455 a.a., DNA repair protein RadA from Sphingobium sp. HT1-2

 Score =  395 bits (1016), Expect = e-114
 Identities = 218/458 (47%), Positives = 296/458 (64%), Gaps = 11/458 (2%)

Query: 1   MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQI 60
           MAKAKR + C +CG    +W GQC +CG WN++VE   E+       S +    G    I
Sbjct: 1   MAKAKRKFVCQQCGTVSGRWQGQCDDCGEWNSIVEEAAET-----VFSAKHDLQGGGRAI 55

Query: 61  KTLAEVSVEEIP-RFTTSSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAV- 118
             +   S  E+P R +T   E DR LGGG+V GS  LIGGDPGIGKST+LLQ    +A  
Sbjct: 56  TLIGLDSKVELPSRTSTGIAEFDRALGGGIVPGSATLIGGDPGIGKSTLLLQAAARVASR 115

Query: 119 GMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIAT-ARVEKPRVMVIDSIQ 177
           G+   Y++GEE+  QV +R++RLGL    +++ + T +  I+ T +    P +++IDSIQ
Sbjct: 116 GLTVAYISGEEASDQVRLRAQRLGLGNAPVQLASATSVRDILTTLSEGVPPALLIIDSIQ 175

Query: 178 TIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTV 237
           T+ ++ ++ APG V+QVR S+  L+++AKQ GTA+ LVGHVTK+GS+AGPRVLEHMVDTV
Sbjct: 176 TMHSDLIEGAPGTVSQVRASSQELIKFAKQRGTALILVGHVTKDGSIAGPRVLEHMVDTV 235

Query: 238 LYFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVV 297
           L FEGE   + R+LRA+KNRFG  +E+GVF M   GL+EV+NPSA+FL    E V G+ V
Sbjct: 236 LAFEGERSHQYRILRAIKNRFGGTDEIGVFSMVAEGLEEVANPSALFLTNRDETVTGATV 295

Query: 298 MATWEGTRPMLVEVQALVDD-SHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVF 356
               EGTRP+LVE+QALV   S  A PRR  +G D  RLAM+LAVL    G+     +V+
Sbjct: 296 FPALEGTRPVLVEIQALVVRLSSGATPRRAVVGWDSGRLAMILAVLEARCGLSFSTCEVY 355

Query: 357 LNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSGEVRPVPSGQERLKEA 416
           LNV GG ++ + A+DLA+ AA+MS+L  RP+   +++FGEI LS E+RPV     RL+E+
Sbjct: 356 LNVAGGYRLSDPAADLAVAAALMSALSERPVPADVVLFGEIALSSEIRPVSHTPLRLRES 415

Query: 417 AKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDAL 454
           AK GF RA VP   A  +   G+ V     L Q +D +
Sbjct: 416 AKLGFNRAFVPASGA--DGVKGISVSGFRTLAQLVDQM 451