Pairwise Alignments

Query, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 73.6 bits (179), Expect = 4e-18
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 11  LTSTVEGL---YHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQARE-APQLVEPRAF 66
           LTS + GL   +  H++ L  +L RR+     AAD+AQ+TY++L+   E A  ++  R+F
Sbjct: 2   LTSPMSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSF 61

Query: 67  LATVAKRVLCNHFRRQELERAYLQALAQVPEEVAPCEEQKAIIF--ETLLALDHLLDGLP 124
           +  VA  +  +  RR++   A         E   P    +A +   E L  LD  L  LP
Sbjct: 62  IFRVAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLP 121

Query: 125 PLVKRAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRC 166
              ++A LL +V+GL Q ++A+ LG+S + V +Y+ +A   C
Sbjct: 122 DNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163