Pairwise Alignments

Query, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 158 a.a., putative RNA polymerase sigma factor FecI from Pseudomonas sp. DMC3

 Score =  135 bits (341), Expect = 3e-37
 Identities = 68/153 (44%), Positives = 95/153 (62%)

Query: 18  LYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLATVAKRVLCN 77
           +Y  H  WL  WLRR + CP  A DL+QDT++RLL   E     EPRAFL  +AK +L +
Sbjct: 1   MYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLNRDELLTPREPRAFLVAIAKGLLFD 60

Query: 78  HFRRQELERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVKRAFLLAQVD 137
           +FRR  LE+AYL  L  +PE+  P  E++ +I + L A+D LL  L    + AFL  ++D
Sbjct: 61  YFRRAALEQAYLTELMLIPEDEQPSVEEQQMILDDLKAIDRLLGKLSTKARAAFLYNRLD 120

Query: 138 GLGQGEIARELGISLATVKRYLNKAAMRCYFAL 170
           GL   EIA +LG+S+  V++YL +   +CY AL
Sbjct: 121 GLSHAEIAGKLGVSVPRVRQYLAQGLRQCYIAL 153