Pairwise Alignments

Query, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 177 a.a., putative RNA polymerase sigma factor FecI from Azospirillum sp. SherDot2

 Score = 67.4 bits (163), Expect = 1e-16
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 7   VTSALTSTVEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAF 66
           V S  + T+  ++  H   L G   R  GC H A D+ QD +++LL A     +     +
Sbjct: 4   VGSVESQTLCDVFTTHRRSLIGVAERITGCRHHAEDVVQDAFLKLLGAESTSSIRAKAGY 63

Query: 67  LATVAKRVLCNHFRRQELERAYLQA-----LAQVPEEVAPCEEQKAIIFETLLALDHLLD 121
           +  V + +  +H+RR+ +E   L A         PE  +P  E   +  + L  L+  L 
Sbjct: 64  MMMVVRNLAIDHYRRKGMESRLLVAEEEGQAVSTPEAASP--ESINVNRQLLQTLESALA 121

Query: 122 GLPPLVKRAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRC 166
            LP   + AF + ++ G  Q +IA  LG+S   V   +  A + C
Sbjct: 122 DLPERTRYAFEMHRIHGHSQKDIAATLGVSPTLVNFMIRDALIHC 166