Pairwise Alignments

Query, 326 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

Subject, 332 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 84/288 (29%), Positives = 127/288 (44%), Gaps = 11/288 (3%)

Query: 11  QFQAALQWFNRINEQPGQAEGAAFKRWLLADPAHRAAYDQAQVLWQKS----AAPAARLA 66
           Q QA   W    + +  +A+  AF+ W+    AH  A+ +    W       A  AAR A
Sbjct: 14  QRQAEAWWVRLHSGRATRADADAFREWVTHSTAHAQAWREVMRTWSALDPLLAEEAARQA 73

Query: 67  DEEQDALQRYLDAMA--RPPARGGWRRVAGLALAACLVLAVGVAGGWHPGYWLQDLQADY 124
                   R L A      P R  +   A  A     V+A+    G  P   + DL ADY
Sbjct: 74  SRAGTLSLRGLSAALGLHSPGRRAFLGGAVAASVTAGVMALDPPLGLWPS--VGDLTADY 131

Query: 125 -SSTGQIRQVILADQSQVTLDAGSAIAVDFAQGERRVRLLHGAAFFEVTHTGEPFLVEAA 183
            ++TG+ RQV LA    V ++  + I    A    R  +L         +    FLVE  
Sbjct: 132 RTATGEQRQVALARGISVRMNTQTLINRIGADASPRGLVLVAGEAEIAANGASDFLVETG 191

Query: 184 GGEVRVLGTQFEVREQGEGAQVTVRSGRVGVSPAQGTVARELTANQQLTYRAGRVGDTLA 243
           GG +     +F +R  G    VT   GR+ VS       R L A +Q+T+    + + + 
Sbjct: 192 GGRLVARSARFNIRHTGPQVCVTCLDGRLTVSV--NGEQRALEAGRQVTFDRAGLQEVVR 249

Query: 244 VDSDNRLAWRQGWLNYYQVPLAQVIDDLGRYYPGRILLLDGDLGQRKV 291
            D  +   WR G L++ ++PLA+VID++ RY PG++ L + +LG+  V
Sbjct: 250 ADEASVSTWRTGVLSFDRMPLAEVIDEINRYRPGKVFLRNEELGRTPV 297



 Score = 25.4 bits (54), Expect = 0.002
 Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 21/145 (14%)

Query: 196 VREQGEGAQVTVRSGRVGVSPAQGTVARELTANQQLTYRAGR-------VGDTLAVDSDN 248
           ++ Q E   V + SGR   + A     RE   +     +A R         D L  +   
Sbjct: 13  LQRQAEAWWVRLHSGRA--TRADADAFREWVTHSTAHAQAWREVMRTWSALDPLLAEEAA 70

Query: 249 RLAWRQGWLNYYQVPLAQVIDDLGRYYPGRILLLDGDLGQRKVSGSFPVAEPLLALDSLG 308
           R A R G L+   +  A     LG + PGR   L G +     +G   +  PL    S+G
Sbjct: 71  RQASRAGTLSLRGLSAA-----LGLHSPGRRAFLGGAVAASVTAGVMALDPPLGLWPSVG 125

Query: 309 KV-------MGFSRQTVLGRLTLVR 326
            +        G  RQ  L R   VR
Sbjct: 126 DLTADYRTATGEQRQVALARGISVR 150