Pairwise Alignments

Query, 377 a.a., Ribonuclease D from Pseudomonas putida KT2440

Subject, 388 a.a., Ribonuclease D (EC 3.1.26.3) from Sphingobium sp. HT1-2

 Score =  185 bits (469), Expect = 2e-51
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 13/377 (3%)

Query: 3   IEIH-WIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLL 61
           ++IH  I D ++L++ C    + P+VAVDTEFMR ++++P+  L+Q+ D   A  IDP  
Sbjct: 1   MQIHPLITDSKTLSDFCARMAKSPYVAVDTEFMRENSYWPELCLVQVADSSEAAAIDPKA 60

Query: 62  IG-NWQPLADLLEDSA-VVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMG 119
            G +  PL DLL ++  V+KV HA  +D+E++  LTGK P P+FDTQ+AA  L LG  +G
Sbjct: 61  PGIDLTPLLDLLVNNEDVLKVFHAGGQDIEIVHNLTGKTPHPMFDTQIAAMALGLGEQIG 120

Query: 120 YSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRL-SDDKYA 178
           Y  LV   LG++L KG   +DW +RPL + Q+ YA  D  +L E+F  +   L    +  
Sbjct: 121 YGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIEIFPKMLEELRKTGRGD 180

Query: 179 WVLEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNR 238
           W+ ++   +      E +P   ++ V++A + A   L  L+ L AWRE+EA+++++PR R
Sbjct: 181 WLDQEMERISDPSNYENDPSEAWKRVRIASRKA-DVLGRLKALAAWREKEAQDKNLPRGR 239

Query: 239 ILKEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQD-GEFLIQLIKRAASLPAEQWPA--P 295
           I+K+ +L  +A   P     L K+  +       D G  L+  +     L  ++ P   P
Sbjct: 240 IVKDETLADIASHPPRAQEDLGKVRGLSATWKSNDIGGRLMAALGAHKPLGKDEMPERDP 299

Query: 296 LPEPLPIEAAGLLKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLR 355
               L  + A +   L+ + +     + +AP L+ R   +EAL       G       L 
Sbjct: 300 KRPGLGKDGALVADLLKLLLKIRSRDINVAPRLLARTDDIEALAA-----GVRDDLAILE 354

Query: 356 GWRRERMGQALLDNLAG 372
           GWR ++ G+  +D + G
Sbjct: 355 GWRYDQFGRDAVDLVEG 371