Pairwise Alignments

Query, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 417 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  310 bits (794), Expect = 5e-89
 Identities = 180/395 (45%), Positives = 241/395 (61%), Gaps = 9/395 (2%)

Query: 17  LATLIRLLGDFDLAEEAMHDAFFIAVERWQRDGIPANPRAWLVSVGRFKAIDALRRRVRF 76
           +A L+R   D D AEEA  +A   A+  W  +G P +P AWL+ VGR  A+D +R+R + 
Sbjct: 24  VAALLRYFRDLDTAEEAFQEACLRALRTWPVNGPPRDPAAWLILVGRNAALDGVRKRAKH 83

Query: 77  DRSQADLSMLLEGQAQDPSEEEL----LADDRLRLIFTCCHPALSADAQVPLTLREVCDL 132
           D    D  +     A+ P  E L      DD LRL+F CCHP L A  Q+ L LR V  L
Sbjct: 84  DPLPPDDQLSDLDDAEAPLAERLDNSHYRDDVLRLLFICCHPELPATQQIALALRIVSGL 143

Query: 133 TTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPELSELPERLESVLRVIYLVFNEG 192
           T ++IARAFL S A + QRI RAKA+I  A +P++ P   E  ERL +V  ++YLVFNEG
Sbjct: 144 TVKEIARAFLVSEAAMEQRITRAKARIARADVPFEAPGPVERAERLGTVAAMVYLVFNEG 203

Query: 193 YSASSGETLLQQALSDEAIRLARLLVQLLP-DPEAVGLLALMLLQASRQRARIDGQGDLV 251
           YSA    +  +  L D+AIRL RLL++L P +PE +GLLALMLLQ +R  AR D  G  +
Sbjct: 204 YSAGGEPS--RAGLCDDAIRLGRLLLRLFPTEPEIMGLLALMLLQHARAAARFDPDGRAI 261

Query: 252 VLEQQDRSLWDRQFIAEGCALVRQALQSRAFGAYTVQAAIAAVHAEAATAEETDWGEIVG 311
           +L++QDR+ WDR+ IAEG ALV +A++ R  G Y +QAA+A +H+ AAT EETDW +I  
Sbjct: 262 LLDRQDRAKWDRERIAEGLALVDKAMRHRRPGTYQIQAAVAGLHSRAATPEETDWAQIDA 321

Query: 312 LYDVLQRYWPSAVVALNRAVALAKRDGPEAGLREVEGILARGELLDYHLAHAARAELHCQ 371
           LY  L+   PS VV LNRAVA++K  G EA L  +E +    +L  Y     AR     +
Sbjct: 322 LYAALEFLQPSPVVTLNRAVAVSKVKGAEAALAMIEPLAP--QLAGYFHFFGARGAFLLE 379

Query: 372 LGQVQEARAAWQQALALTRQAPERRHIERRLQAIE 406
           LG+ QEAR A+ +A+AL     E  HI  ++  I+
Sbjct: 380 LGRQQEARVAFDRAIALANTPAEAEHIRAQIDLIQ 414