Pairwise Alignments

Query, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 407 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score =  541 bits (1393), Expect = e-158
 Identities = 281/406 (69%), Positives = 333/406 (82%), Gaps = 3/406 (0%)

Query: 1   MRAEVEAVYRQESRRILATLIRLLGDFDLAEEAMHDAFFIAVERWQRDGIPANPRAWLVS 60
           M   VEA+YR ESRR+LATLIRLLGDFDLAEEA+H+AFF+AV+RW  DG+P NPRAWLVS
Sbjct: 1   MTLSVEAIYRSESRRVLATLIRLLGDFDLAEEALHEAFFVAVQRWPLDGVPDNPRAWLVS 60

Query: 61  VGRFKAIDALRRRVRFDRSQADLSMLLEGQAQDPSEEELLADDRLRLIFTCCHPALSADA 120
            GRFKAID LRR  RF     + +  LE  A D S++++  DDRLRLIFTCCHPAL+ADA
Sbjct: 61  TGRFKAIDRLRREARFTPLLQEQADALE--AADWSDQDV-EDDRLRLIFTCCHPALAADA 117

Query: 121 QVPLTLREVCDLTTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPELSELPERLES 180
           Q  LTLRE+CDLTTE+IARAFL +PATIAQRIVRAK KIR+A IPYQVP L ELP RL+S
Sbjct: 118 QAALTLREICDLTTEEIARAFLATPATIAQRIVRAKGKIREAKIPYQVPSLDELPGRLDS 177

Query: 181 VLRVIYLVFNEGYSASSGETLLQQALSDEAIRLARLLVQLLPDPEAVGLLALMLLQASRQ 240
           VLRVIYLVFNEGYSAS G  L ++AL+ EAIRL RLL++LLP+PE +GLLALMLL  SR+
Sbjct: 178 VLRVIYLVFNEGYSASMGADLTREALTREAIRLGRLLLELLPEPEVMGLLALMLLHESRR 237

Query: 241 RARIDGQGDLVVLEQQDRSLWDRQFIAEGCALVRQALQSRAFGAYTVQAAIAAVHAEAAT 300
            AR    G+LV+L++QDRSLWD   IAEGCALV QAL +R FG Y +QAAIAAVHAEA+ 
Sbjct: 238 PARTSANGELVLLDEQDRSLWDAALIAEGCALVEQALGTRRFGPYGLQAAIAAVHAEASR 297

Query: 301 AEETDWGEIVGLYDVLQRYWPSAVVALNRAVALAKRDGPEAGLREVEGILARGELLDYHL 360
           A+ETDW +IVGLYDVL R  PS V+ LNRAVALA RDGP AGL++VEGILARGELLDYH 
Sbjct: 298 ADETDWPQIVGLYDVLLRAAPSPVIELNRAVALAMRDGPLAGLQQVEGILARGELLDYHW 357

Query: 361 AHAARAELHCQLGQVQEARAAWQQALALTRQAPERRHIERRLQAIE 406
            H+AR E   QLG+V+EARAA+++AL+LT+QAPE+R +E+RL  ++
Sbjct: 358 VHSARGEFCRQLGRVEEARAAYEKALSLTQQAPEKRFLEQRLAELQ 403