Pairwise Alignments

Query, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 430 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  333 bits (853), Expect = 7e-96
 Identities = 189/416 (45%), Positives = 258/416 (62%), Gaps = 12/416 (2%)

Query: 1   MRAEVEAVYRQESRRILATLIRLLGDFDLAEEAMHDAFFIAVERWQRDGIPANPRAWLVS 60
           +R  VEAV+R ES +I+AT+ R++ D  LAEE   DA   A+E+W   G+P NP AWL +
Sbjct: 11  IRRTVEAVWRMESAKIIATVARMVRDVGLAEELAQDALVSALEQWPDAGVPDNPAAWLTA 70

Query: 61  VGRFKAIDALRRRVRFDRSQADLSMLLEGQ----------AQDPSEEELLADDRLRLIFT 110
           V + +A+D LR     +    ++   L+ +          A D + ++ + DD LRL+FT
Sbjct: 71  VAKRRALDRLRHLQLAEHKAGEIGRELDARHEMAQADFADAVDAALDDDIGDDLLRLVFT 130

Query: 111 CCHPALSADAQVPLTLREVCDLTTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPE 170
            CHP LS +A+V LTLR +  LTT++IARAFL   AT+AQRIVRAK  + +A +P++VP 
Sbjct: 131 ACHPVLSTEARVALTLRVMGGLTTDEIARAFLVPEATVAQRIVRAKRTLAEARVPFEVPR 190

Query: 171 LSELPERLESVLRVIYLVFNEGYSASSGETLLQQALSDEAIRLARLLVQLLP-DPEAVGL 229
             EL  RL SVL VIYLVFNEGYSA++G+  ++ AL DEA+RL R++ +L+P + E  GL
Sbjct: 191 RHELEARLASVLEVIYLVFNEGYSATAGDDWMRPALCDEALRLGRIVAELVPKEAEVHGL 250

Query: 230 LALMLLQASRQRARIDGQGDLVVLEQQDRSLWDRQFIAEG-CALVRQALQSRAFGAYTVQ 288
           +ALM +QASR  AR+   G+ V+L +Q+R+ WD+  I  G  AL R      A G Y +Q
Sbjct: 251 VALMEIQASRTAARVGASGEPVLLLEQNRARWDQLLIRRGLAALARAESLGGALGPYALQ 310

Query: 289 AAIAAVHAEAATAEETDWGEIVGLYDVLQRYWPSAVVALNRAVALAKRDGPEAGLREVEG 348
           AAIAA H  A TA+ETDW  I  LYD L    PS +V LNRAVAL+   GP AGL  V+ 
Sbjct: 311 AAIAACHGRARTADETDWARIAALYDALAGLAPSPIVELNRAVALSMAFGPAAGLEVVDS 370

Query: 349 ILARGELLDYHLAHAARAELHCQLGQVQEARAAWQQALALTRQAPERRHIERRLQA 404
           +     L  YHL    R +L  +LG+  EAR  + +A +LTR   ER  +  R +A
Sbjct: 371 LTDEPALKGYHLLPTVRGDLLFKLGRRDEARKEFDRAASLTRNTRERALLLARARA 426