Pairwise Alignments

Query, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 414 a.a., Predicted RNA polymerase sigma factor containing a TPR repeat domain from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  207 bits (528), Expect = 4e-58
 Identities = 134/408 (32%), Positives = 214/408 (52%), Gaps = 16/408 (3%)

Query: 2   RAEVEAVYRQESRRILATLIRLLG--DFDLAEEAMHDAFFIAVERWQRDGIPANPRAWLV 59
           R  V  ++RQE  ++ A L R  G    ++AE+   D F  A E W  +G+P NP AWL 
Sbjct: 8   RELVPHLFRQEYAKMTAILCRHFGLKHMEIAEDITSDTFLKASEHWAINGVPENPTAWLY 67

Query: 60  SVGRFKAIDALRRRVRFDRSQADLSMLLEGQAQDPSE-----EELLADDRLRLIFTCCHP 114
           +V + KA D  +R   F++    +   L+    +PSE     ++L++D +L +IF  CHP
Sbjct: 68  TVAKNKARDYFKRTDVFEKQ---IMPDLKSGDTEPSEMVSFDDQLISDSQLAMIFAVCHP 124

Query: 115 ALSADAQVPLTLREVCDLTTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPELSEL 174
           A S ++Q+ L L+ +C  + E+IA AFL    TI +R+ RA+  +R+     +    +E+
Sbjct: 125 ANSGESQIALALQILCGFSVEEIANAFLSKRDTIKKRLQRARNNLRNTDFQIKTLSTTEI 184

Query: 175 PERLESVLRVIYLVFNEGYSASSGETLLQQALSDEAIRLARLLVQ--LLPDPEAVGLLAL 232
             R  +VL+ +YL+FNEGY ++SG   +++ L  EAIRL  +L +  L    +   L+AL
Sbjct: 185 QSRQGTVLKTLYLLFNEGYYSTSGNKFIRKELCSEAIRLMLVLTENPLTNSAQTNALMAL 244

Query: 233 MLLQASRQRARIDGQGDLVVLEQQDRSLWDRQFIAEGCALVRQALQSRAFGAYTVQAAIA 292
           M  Q+SR  AR D  G++++ ++QD++LWD   I  G   +  A   +    Y ++A IA
Sbjct: 245 MCFQSSRIEARTDENGEVILFDEQDKNLWDMSLIERGIYYLVNATNGKETSKYHLEAGIA 304

Query: 293 AVHAEAATAEETDWGEIVGLYDVLQRYWPSAVVALNRAVALAKRDGPEAGLREVEGILAR 352
             H    T     WG I+ LY+ L     S + ALNR  A +K  G +  + E E +  R
Sbjct: 305 YWH---TTQHGDKWGNILRLYNQLLLMEYSPITALNRTFAFSKVYGHQMAIAEAEKLGIR 361

Query: 353 GELLDYHLAHAARAELHCQLGQVQEARAAWQQALALTRQAPERRHIER 400
                Y L     A+   ++  +Q   AA +   + T++A  +R IER
Sbjct: 362 ESSQYYELLGYLYAQSD-KIKAIQYYEAAIKHTKSNTKKATLKREIER 408