Pairwise Alignments

Query, 1301 a.a., ATP-dependent helicase HrpA from Pseudomonas putida KT2440

Subject, 809 a.a., ATP-dependent helicase HrpB from Escherichia coli ECOR38

 Score =  243 bits (619), Expect = 7e-68
 Identities = 170/486 (34%), Positives = 261/486 (53%), Gaps = 33/486 (6%)

Query: 69  NLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAHTQPRRIAA 128
           +LP+AA   E+  AL     ++++  TG+GK+T LP + L    G +G I   +PRR+AA
Sbjct: 3   SLPVAAVLPELLAALDGAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61

Query: 129 RSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRFLERYDTII 188
           R+VA R+AE L    G  VGY++R ++    NT ++++T+G+L    Q D  L     +I
Sbjct: 62  RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121

Query: 189 VDEAHERSLNIDFLLGYLKTLLHR-RPDLKLIITSATIDLERFSRHFDGAPIIEVSGRTF 247
           +DE HERSL  D  L  L  +    R DLKL+I SAT+D +R  +    AP+I   GR+F
Sbjct: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVIISEGRSF 181

Query: 248 PVDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLIFLPGERE 307
           PV+  Y PL + Q             D+A+     E+ + E       G +L+FLPG  E
Sbjct: 182 PVERRYLPLPAHQ-----------RFDEAVAVATAEMLRQES------GSLLLFLPGVGE 224

Query: 308 IRDAAEILRKAQLRHTEILPLYARLSPAEQQRIF--QPHTGRRVVLATNVAETSLTVPGI 365
           I+   E L         + PLY  LS  +Q++     P   R+VVLATN+AETSLT+ GI
Sbjct: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284

Query: 366 RYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEEDFNSR 425
           R V+D    R++R+  R  + RL  + VSQAS  QR GR GR+EPGIC+ L ++E     
Sbjct: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERA 344

Query: 426 PAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAVNRENQ 485
            A ++PEIL+++L+ +++++L           +++ P    +     LL+ L  ++ E +
Sbjct: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLRMLGVLDGE-R 403

Query: 486 LTPIGRQLARLPIDPRLGRMLL------EGARLGSLQEVL-----IVTSALSVQDPRERP 534
           L+  G+++A L  DPRL  ML+      E A    +  +L     +  S L V   R +P
Sbjct: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQP 463

Query: 535 PERQQA 540
             +Q++
Sbjct: 464 AWQQRS 469