Pairwise Alignments

Query, 1301 a.a., ATP-dependent helicase HrpA from Pseudomonas putida KT2440

Subject, 1295 a.a., ATP-dependent RNA helicase HrpA from Dickeya dianthicola ME23

 Score = 1236 bits (3199), Expect = 0.0
 Identities = 661/1309 (50%), Positives = 889/1309 (67%), Gaps = 30/1309 (2%)

Query: 4    HAIDKLLQNLDHAMIADRHCLRRQLHELRKRPD---EAKLAQWV-EKVQASCAQVTARQQ 59
            HA++  L  L   M+ DR  LRR+L    K  +   +  +AQ +  ++ A+  +V  R+ 
Sbjct: 6    HALEPQLNAL---MLRDRQRLRRRLQGAMKVGNPQAQVSIAQEIGREIDAARLRVEQRKA 62

Query: 60   SVPTVRYDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIA 119
            S+P +RY + LP++ KR+ I  A+ ++QV+++AGETGSGKTTQLPK+CLELGRG  GLI 
Sbjct: 63   SLPAIRYPEALPVSQKREAILSAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGLIG 122

Query: 120  HTQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDR 179
            HTQPRR+AARSVA R+A EL TPLG  VGY+VRF DQ   NTLVKLMTDGILLAE Q DR
Sbjct: 123  HTQPRRLAARSVADRIAAELETPLGGAVGYKVRFNDQIGDNTLVKLMTDGILLAEIQQDR 182

Query: 180  FLERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAPI 239
             L +YDT+I+DEAHERSLNIDF+LGYL+ LL RRPDLK+IITSATID +RFSRHF  API
Sbjct: 183  LLMQYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPQRFSRHFGNAPI 242

Query: 240  IEVSGRTFPVDTWYRPLTSE-QDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDV 298
            IEVSGRT+PVD  YRP+  E QD + +Q+       QA+L  +DEL +      +GPGD+
Sbjct: 243  IEVSGRTYPVDVRYRPVVEEAQDGDRDQL-------QAMLDAVDELCR------EGPGDI 289

Query: 299  LIFLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAET 358
            L+F+ GEREIRD A+ L K  L HTEILPLYARLS  EQ R+FQ H GRR+VLATNVAET
Sbjct: 290  LVFMSGEREIRDTADALNKQDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAET 349

Query: 359  SLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS 418
            SLTVPGIRYVID GTARISRYSYR KVQRLPIE VSQASANQRKGRCGRV  GIC+RLYS
Sbjct: 350  SLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAAGICIRLYS 409

Query: 419  EEDFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELS 478
            E+DF SRPAFTDPEILRTNLA+VILQM  L LG I AFPF++ PD + I DG  LL+ELS
Sbjct: 410  EQDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVDAPDKRNIQDGVRLLEELS 469

Query: 479  AVNREN----QLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERP 534
            A+   +    +LTP GR LA+LPIDPRL RM+LE  +   ++E +I+T+ALS+QDPRERP
Sbjct: 470  ALQSSDDGHYRLTPQGRHLAQLPIDPRLARMVLEARQTSCVREAMIITAALSIQDPRERP 529

Query: 535  PERQQAADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREW 594
             E++QAA++ H ++ D +SDF   VNLW   +EQ++AL+++  R  CR  +LNYLR+REW
Sbjct: 530  VEKKQAAEEKHRRFVDKESDFLTFVNLWDYLQEQQKALSSSQFRKLCRSDYLNYLRVREW 589

Query: 595  RDAHRQLALICRDLQLTVNKEPTDYQKLHKAILSGLLSQIGQK-TEEGDYQGARQRRFWV 653
            +D + QL  + ++L   VN EP DY+ LH A+L+GLLS IGQK  E+ ++ GAR  RF +
Sbjct: 590  QDIYTQLRQVVKELGFPVNSEPADYRSLHGALLTGLLSHIGQKDVEKQEFSGARNTRFAI 649

Query: 654  HPSSGLGRKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRG 713
             P SGL +K P+W + AELVET++L+ R+ A+IEP+W+EPLA HLIK+++ EPHWEK +G
Sbjct: 650  FPGSGLFKKPPKWAIVAELVETSRLWGRIAARIEPEWVEPLAQHLIKRSYSEPHWEKAQG 709

Query: 714  QVVAYEQITLYGLILVGRRPVHYGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLG 773
             V+A E++TLYGL LV  R V+YG IDP  SRELFIR  LV G+ Q++     AN++L  
Sbjct: 710  AVMAQEKVTLYGLPLVAARKVNYGAIDPVVSRELFIRHALVEGDWQTQHAFFRANQKLRS 769

Query: 774  ELDELEAKARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREED 833
            E++ELE K+RRRDIL D+E L+AFY+ RLP ++  +  FD+W+   S+ D + L   +  
Sbjct: 770  EVEELENKSRRRDILVDDEMLFAFYDQRLPQDLVSSRHFDNWWTQASKTDPDRLNFEKTM 829

Query: 834  VLAREASEVTAAQYPDSMQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWL 893
            ++   A  V+A  YP+  Q G+LRL L+Y FEPG   DGVTV +P P+L  +  +  EW 
Sbjct: 830  LIKDGAERVSALDYPNHWQQGELRLRLTYQFEPGADADGVTVHIPLPVLNQVKEDGFEWQ 889

Query: 894  VPGLLEAKCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGAR 953
            +PGL     VAL+++LPK +R+NFVP P++  A LAR+T  +  L +AL +EL +MTG  
Sbjct: 890  IPGLRRDVVVALIKSLPKPIRRNFVPAPNYADAFLARVTPLEKGLLEALERELRQMTGVT 949

Query: 954  VSDEAWDESVNQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAAL-AVPRDAK 1012
            V  EAW    +QV  HL+M   VVD + + L EG++L  L  +     Q  L AV  D  
Sbjct: 950  VDREAW--QWDQVADHLKMTFRVVDEKNRTLREGKNLRALKDQLQEKVQQTLSAVADDGI 1007

Query: 1013 GEQPVQAKAFSEVKQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQR 1072
             ++ +   +F ++ +  +QK  G ++  YPALV++  +V    F T  + +    R  +R
Sbjct: 1008 EQRELHIWSFGDLPERYEQKRGGYAVKAYPALVDEKDSVAIRLFDTPHQQQQMMWRGQRR 1067

Query: 1073 LLLQQLAEPAKFLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPREG 1132
            LLL  +  P K+L  KLP   +LGL +   G+V  L++D +   +D  +     P+ +E 
Sbjct: 1068 LLLLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLMTVAGGPVWQED 1127

Query: 1133 AALAALAERKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGN 1192
             A   L ER R    +    +A+Q  ++L     + KR KG++D++ A+AL+DIK Q+  
Sbjct: 1128 -AFRQLHERVRAELNDTVVDIAQQVEQILTAVFSINKRLKGRVDMALALALSDIKSQMSG 1186

Query: 1193 LVYPGFVRETPGVWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKH 1252
            LV+ GFV +       ++ RYL+A+E RL+KL   V +DR    ++  +   ++   +  
Sbjct: 1187 LVFRGFVTDNGWKRLPDVLRYLQAIERRLDKLAQDVHRDRAQMLKVEQVQQAWQQWLNTL 1246

Query: 1253 AQEGKRDEQLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG 1301
              E + D+ +   RW +EE RVS FAQQLGT  P+SDKR+ +  +Q+EG
Sbjct: 1247 PPERREDDDVKAIRWMIEELRVSYFAQQLGTPYPVSDKRILQAMAQIEG 1295