Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  284 bits (726), Expect = 6e-81
 Identities = 174/469 (37%), Positives = 254/469 (54%), Gaps = 33/469 (7%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F+   L E L++A+    + EPTPVQ  AIP  LQGRDL V AQTG+GKT  F LP+L R
Sbjct: 3   FASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 62  LV--------DLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKE 113
           L            GPR + R L+L PTRELA Q     +L+++     S  + GG     
Sbjct: 63  LFPNGHPDKSQRHGPR-QPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121

Query: 114 QAAMLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKEC 173
           Q   + +  DVL+  PGRLL+    G++DLSHV++L+LDEADRMLDMGF  D++++    
Sbjct: 122 QVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181

Query: 174 ENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQI 233
             + Q LLFSAT     +  + GK+L +PE + +   +   E   Q++       HK  +
Sbjct: 182 PAKRQNLLFSATFS-QDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAAS-HKRAL 239

Query: 234 AQWLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGS 293
              L+    +++ ++FT T+  A+R+  +L    + A  +HG K Q  R  A+  FK GS
Sbjct: 240 LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGS 299

Query: 294 SKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWN 353
            ++LVATD+AARGLDID L  V+NF++P   ++YVHR+GRTGRAG  G AISL+  ++  
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 354 LMSSIERYLKQQF------------------ERRVIKEVKGTYN--GPKKVKASGKAAGS 393
           L+ SIER  KQ+                   E R   +V+   N  GPK    +G   G 
Sbjct: 360 LLKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGG 419

Query: 394 KKKKVEKKTGDKKAAAKR--KPTAKPKANAPLASADGLAPLKKRKPAAE 440
            ++   K  G +K+A+ R  +P  + K      + +   P +  + AA+
Sbjct: 420 GRRDKGKDKGKEKSASGRGERPAREQKPREGTPAREQRQPSQPPRAAAD 468