Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  284 bits (726), Expect = 5e-81
 Identities = 178/456 (39%), Positives = 262/456 (57%), Gaps = 36/456 (7%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F+   L E LL+A+  L +  PTPVQA AIP  L GRDL   AQTG+GKTA F +PLL +
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL-Q 61

Query: 62  LVDLSGPRV---EIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAML 118
           L+ + GP+V     RALIL PTRELA+Q    V  ++Q   + +  V GG     Q   L
Sbjct: 62  LLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMKL 121

Query: 119 RKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQ 178
           RK  D+L+ TPGRL++      L L+ +Q L+LDEADRMLD+GF+E++  + +    + Q
Sbjct: 122 RKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQ 181

Query: 179 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLL 238
           TLLFSAT     +R + G++L DP  + ++  +  A   +Q ++  D  + K ++   L+
Sbjct: 182 TLLFSATFSDD-IRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDK-KRKPELFVHLM 239

Query: 239 ANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLV 298
               + + ++F  TR   D +   L    + A  +HG+K Q  R+ A++RFK    ++LV
Sbjct: 240 RKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILV 299

Query: 299 ATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSI 358
           ATDVAARGLDI+ L LV+NFD+P   ++Y+HR+GRTGRAG  G AISL+  ++ N++S+I
Sbjct: 300 ATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359

Query: 359 E--------RYLKQQFE-----------RRVIKEVKGTYNGPKKVKASGKAAGSKKKKVE 399
           E        R+++Q FE            +V+K+ K     PKK K+SG   G  K+ + 
Sbjct: 360 EMLTRQTLTRHMEQDFEPEHRVPDTDASGQVVKKPK----KPKKPKSSG---GGGKRNLG 412

Query: 400 KKTGDKKAAAKRKPTAKPKANAPLASADGLAPLKKR 435
           K   D    A  +P+ KP    P+ +     P KK+
Sbjct: 413 KWV-DSGEVAPAEPSIKPVRKVPVFNT---GPRKKK 444