Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  270 bits (689), Expect = 1e-76
 Identities = 152/377 (40%), Positives = 224/377 (59%), Gaps = 9/377 (2%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F +  L   +LKAV E  +  PTP+QA AIP  L G DL   AQTG+GKTAAF LP+L++
Sbjct: 3   FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPMLHK 62

Query: 62  LVDLSGPRVE------IRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQA 115
           L  +S           IRAL+L PTRELA Q  + V+ + ++  + S ++ GG     Q 
Sbjct: 63  L-SMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQI 121

Query: 116 AMLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECEN 175
           + L+K  D+L+ TPGRLL+    G LDLS VQ+LILDEADRMLDMGF  D++++      
Sbjct: 122 SKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPK 181

Query: 176 REQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQ 235
            +Q+LLFSAT     +RD+   +LK+P+ + +   +   +   Q I      + K  +A 
Sbjct: 182 EKQSLLFSATFSDD-IRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240

Query: 236 WLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 295
            +  N+ + + ++FT T+  A+ +   L    ++A  LHG K Q  R  A+  FK G  +
Sbjct: 241 IINENK-WSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299

Query: 296 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLM 355
            LVATD+AARG+DID L  V+N+++P   ++YVHR+GRTGRAG  G A+S +  ++   M
Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFM 359

Query: 356 SSIERYLKQQFERRVIK 372
             IER+ KQ    ++++
Sbjct: 360 QEIERFTKQTIPVQIVE 376