Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

 Score =  271 bits (694), Expect = 3e-77
 Identities = 151/372 (40%), Positives = 227/372 (61%), Gaps = 8/372 (2%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           FS  +L E L +AVAE+ +   TP+Q  AIP+ L G+D+   AQTG+GKTAAF LPLL R
Sbjct: 5   FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 62  LV-----DLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAA 116
           ++       S  R  +RAL+LLPTRELA Q  +Q++L++++T ++S +V GG D K Q  
Sbjct: 65  MLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYTNLRSTVVFGGIDMKPQTL 124

Query: 117 MLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENR 176
            L+K  +VL+ TPGRLL+ + A N  L+ V+ ++LDEADRMLD+GF  D++R+      +
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 177 EQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQW 236
             TLLFSAT     ++ +    L++P  + +   ++ A    Q   +   D  +  + Q 
Sbjct: 185 RTTLLFSATF-SPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKRRALKQ- 242

Query: 237 LLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKV 296
           ++      +A +F N++    R+   L    ++   LHG+K Q +R  A+  FK G   +
Sbjct: 243 IVRQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDL 302

Query: 297 LVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLIT-HNDWNLM 355
           LV TDVAARGLDI  +  V NFD+P + ++YVHR+GRTGRAG  GLA+S  +  ND  L+
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARLV 362

Query: 356 SSIERYLKQQFE 367
           + IE+ +K++ E
Sbjct: 363 ADIEKLIKKKIE 374