Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  261 bits (668), Expect = 3e-74
 Identities = 150/409 (36%), Positives = 231/409 (56%), Gaps = 6/409 (1%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F++  L E ++KA+   K+ EPTP+Q  AIP+ L+GRDL   AQTG+GKTAAF LP L+ 
Sbjct: 3   FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62

Query: 62  LVDLSGPRV--EIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLR 119
                 P      R L+L PTRELA Q  +  + + +F  +    V GG    +Q   L 
Sbjct: 63  FARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRALS 122

Query: 120 KVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQT 179
              D+++ TPGRLL+ ++     +   ++ +LDEAD+M+DMGF   ++R+ K      Q 
Sbjct: 123 AGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDRQN 182

Query: 180 LLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLA 239
           L FSAT     +  + G+ L DP  + +   S  AE  RQQ+ T  +   K+ +   +L 
Sbjct: 183 LFFSATMP-KEIEALAGQFLNDPVKVSVAPQSTTAERVRQQL-TFVNQAEKQALLHIVLK 240

Query: 240 NETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVA 299
            E  D+A+IFT T+  ADR+   L    ++AF +HG K Q  R  A++ F+ G  K+LVA
Sbjct: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300

Query: 300 TDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIE 359
           TD+AARG+D+ G+  VINF++P   ++YVHR+GRT RAG +G+AIS +  ++   + +IE
Sbjct: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360

Query: 360 RYLKQQFERRVIKE--VKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKK 406
           R  K + E   + E  ++   N PK        + S  ++ ++  G ++
Sbjct: 361 RATKVKPEIVPLPENFLEAVRNLPKPAPQRRGPSQSPAQQAKRAEGQRR 409