Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  275 bits (703), Expect = 3e-78
 Identities = 171/458 (37%), Positives = 247/458 (53%), Gaps = 30/458 (6%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F+   L E L++A+    + +PTPVQ  AIP  LQGRDL V AQTG+GKT  F LP+L R
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 62  LVDLS--------GPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKE 113
           L            GPR + R L+L PTRELA Q     +++++   + S  + GG     
Sbjct: 63  LFPAGHPDKSQRHGPR-QPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121

Query: 114 QAAMLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKEC 173
           Q   + K  DVL+  PGRLL+    G +DL+HV++L+LDEADRMLDMGF  D++++    
Sbjct: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181

Query: 174 ENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQI 233
             + Q LLFSAT     + D+  K+L +PE + +   +   E   Q++       HK  +
Sbjct: 182 PAKRQNLLFSATFS-KDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPAS-HKRAL 239

Query: 234 AQWLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGS 293
              L+    +++ ++FT T+  A+R+  +L  + + A  +HG K Q  R  A+  FK  S
Sbjct: 240 LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANS 299

Query: 294 SKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWN 353
            +VLVATD+AARGLDID L  V+NF++P   ++YVHR+GRTGRAG  G AISL+  ++  
Sbjct: 300 VRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 354 LMSSIERYLKQQ--------FERRVIKEVK--------GTYNGPKKVKASGKAAGSKKKK 397
           L+ SIER  KQ+        F+   ++  K            G +  +A G+  G     
Sbjct: 360 LLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGE-GGKDTNG 418

Query: 398 VEKKTGDKKAAAKRKPTAKPKANAPLASADGLAPLKKR 435
             K  G  K  A+++  AKP       S D   P K R
Sbjct: 419 GRKDKGKDKGKARQQAAAKPDDKE--KSGDKQQPRKPR 454