Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  279 bits (713), Expect = 1e-79
 Identities = 169/444 (38%), Positives = 250/444 (56%), Gaps = 11/444 (2%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F++  L E LL+ + +L +  PTPVQA AIP  L GRDL   AQTG+GKTA F LP+L R
Sbjct: 3   FAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQR 62

Query: 62  LVDLSGPRV---EIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAML 118
           L  L G +V    IRAL+L+PTRELA+Q    V+ +++   + +  V GG     Q   L
Sbjct: 63  LA-LEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRL 121

Query: 119 RKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQ 178
           R+  D+L+ TPGRLL+      +  + VQ L+LDEADRMLD+GFAE+++ +      + Q
Sbjct: 122 RRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQ 181

Query: 179 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLL 238
           TLLFSAT     +R + G  L DP  + ++  +  A   +Q ++  D  + K  +   LL
Sbjct: 182 TLLFSATFSDQ-IRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDK-KRKADLFCHLL 239

Query: 239 ANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLV 298
             + + + ++F  TR   D++   L+A+ V A  +HG++ Q  R+ A++ FK    +VLV
Sbjct: 240 RKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLV 299

Query: 299 ATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSI 358
           ATDVAARGLDID L LV+N D+P   ++YVHR+GRTGRAG +G AISL+  ++  L+++I
Sbjct: 300 ATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAI 359

Query: 359 ERYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPK 418
           E   +Q   R    +    +  P    +       KK K  K+   K+   +   + +  
Sbjct: 360 EVLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSTEAA 419

Query: 419 ANAPLASADGLAPL-----KKRKP 437
           +  P   A    P      +KRKP
Sbjct: 420 SAEPAVKAVRKVPSFNGGPRKRKP 443