Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 450 a.a., ATP-dependent RNA helicase SrmB from Dickeya dianthicola ME23

 Score =  296 bits (758), Expect = 9e-85
 Identities = 178/442 (40%), Positives = 251/442 (56%), Gaps = 16/442 (3%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           FS+F L + LL A+ ++ F  PT +QA AI  A++GRD+  +A TG+GKTAA++LP+L  
Sbjct: 6   FSEFDLDDSLLDALRDMGFSRPTAIQAEAISPAMEGRDVLGSAPTGTGKTAAYLLPVLQH 65

Query: 62  LVDL----SGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAM 117
           L+D     SGP    R LIL PTRELA Q   Q +  +  T++    +TGG  +   A +
Sbjct: 66  LLDFPRKKSGPP---RILILTPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHAEV 122

Query: 118 LRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRE 177
             +  DV++ T GRLL+ +   N D   V+ LILDEADRMLD+GFA+D+E +  E   R+
Sbjct: 123 FSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIEHIAGETRWRK 182

Query: 178 QTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWL 237
           QT+LFSAT  G A++D   ++L DP  +  +   +  +   Q    AD  QHK  +   L
Sbjct: 183 QTMLFSATLEGDAIQDFADRLLNDPIKVEADPSRRERKKILQWYYRADDVQHKTALLSHL 242

Query: 238 LANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVL 297
           L      ++I+F   R     +   L +  +++  L GE  Q  R  AI+R  +G   VL
Sbjct: 243 LKQPDVTRSIVFVRKRERVHELVDWLRSVGIESCYLEGEMVQAKRNEAIKRLSEGRVNVL 302

Query: 298 VATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSS 357
           VATDVAARGLDI  +  V NFD+PR+ D Y+HR+GRTGRAG +G AISL+  +D+ L+  
Sbjct: 303 VATDVAARGLDIQDVSHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEK 362

Query: 358 IERYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKP 417
           I RYL +  + RV+ E++     P     S KA G   KKV  K  + K   K K  AK 
Sbjct: 363 IGRYLNEPLKARVVDELRPATRAP-----SPKANGKPSKKVLAKRSELKQKEKEKQKAKV 417

Query: 418 KANAPLASADGLAPLKKRKPAA 439
           K     +   G    K+R+P+A
Sbjct: 418 KVRHRDSKNIG----KRRQPSA 435