Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 80/347 (23%), Positives = 133/347 (38%), Gaps = 26/347 (7%)

Query: 11  DIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRP------GLTVVVS 64
           D  GY      QA  +  +  G D +    TG GK+  F + GLL P      G   +V 
Sbjct: 22  DSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGI-GLLNPINPRYFGCQALVM 80

Query: 65  PLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGE--VKMLYLAPERLVQPR 122
                + DQVA        A      LT      L  ++   E    ++   P R+ Q  
Sbjct: 81  CPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEHGAHVIVGTPGRIQQHL 140

Query: 123 MLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTRE 182
               L    ++   +DEA  +   G     E +    +++  P    +  +AT  +  ++
Sbjct: 141 RKGSLVLDGLNTLILDEADRMLDMGFYDAIEDI----ISKTPPRRQTLLFSATYPVSIKQ 196

Query: 183 ---EIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRK 239
              + ++      AE F S       FY I P+E     +   L   R  + + +C +++
Sbjct: 197 LASKFMRAPQQVKAEAFHSDDQIEQRFYEISPEER-MDAVTKVLAHFRPASCVAFCFTKQ 255

Query: 240 KVDETAAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRF 299
           +V ET   L S+G  A+  H  L    R      F N    ++VAT     G+D  ++  
Sbjct: 256 QVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDSLDM 315

Query: 300 VAHLDLPKSLEAYYQETGRAGRDG---------LPSDAWMAYGLQDM 337
           V +++L +  E +    GR GR G          PS+A  A  ++ +
Sbjct: 316 VINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQL 362