Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 708 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas simiae WCS417

 Score = 1201 bits (3106), Expect = 0.0
 Identities = 599/715 (83%), Positives = 658/715 (92%), Gaps = 7/715 (0%)

Query: 1   MLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLT 60
           MLEQAQRVLKDIFGYDSFRGRQ AIIE VA+GGDALVLMPTGGGKSLCFQVP LLR GL 
Sbjct: 1   MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA 60

Query: 61  VVVSPLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQ 120
           VVVSPLIALMDDQVATL+ELGV+AA+LNSTL+AEQQR+LA R++RGEVKMLYLAPERLVQ
Sbjct: 61  VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ 120

Query: 121 PRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT 180
           PRML FL+ L+I+LFAIDEAHCVSQWGHDFR EYLQLGQLAELFP VPRIALTATAD RT
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT 180

Query: 181 REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK 240
           REEIV+RLHLQ AERFLSSFDR NIFYRIVPKE PRKQL+AFL ERR +AGIVYCLSRKK
Sbjct: 181 REEIVERLHLQNAERFLSSFDRSNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK 240

Query: 241 VDETAAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV 300
           VDE AAFLC QG+PALPYHAGL  + RA +Q RFLNEEGLIMVATIAFGMGIDK NVRFV
Sbjct: 241 VDEVAAFLCEQGYPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV 300

Query: 301 AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK 360
           AH+DLPKSLEAYYQETGRAGRDGLP+DAWM YGLQD+VMLKQMLQNSEGDERHKR+EQHK
Sbjct: 301 AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK 360

Query: 361 LDAMLALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTG 420
           LDAML+LCEETRCRRQ+LLAYFDE + +PCGHCDNCVD +QTWDATEPARQ LSA++RTG
Sbjct: 361 LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYRTG 420

Query: 421 QRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLE 480
           QRYGVGHLVDVLLGKD EKVR+FGHEKLSV+GVGK  AE EWRSLFRQ+VARGLVDID+E
Sbjct: 421 QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIE 480

Query: 481 GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERDLWEALR 540
           G+GGLRL+DSCRPLL+GEV+L+LRRDLKPQTTAK+S+S     ASQLVR EER+ WEALR
Sbjct: 481 GFGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQ----ASQLVRGEEREQWEALR 536

Query: 541 TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN 600
           TLRRKLA+EHSVPPYVIFPDSTLLEMLR QP S+++MA+VSGVGARKLERYGQAFLEVL 
Sbjct: 537 TLRRKLAQEHSVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEVL- 595

Query: 601 NSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLDQ 660
             GG  EAPK V D+RHEL+SLARAGMTP QIAGQL CSEKNVY+LLAE++G+Q+LSL+Q
Sbjct: 596 --GGQAEAPKEVADIRHELISLARAGMTPVQIAGQLQCSEKNVYTLLAESIGKQQLSLEQ 653

Query: 661 AIDLPEDLMMEVQDAFLDGEGELPPVSAIAPQFGARVPEGVLYCVRAALAAEFEL 715
           A+DLPEDL+ E+QDAFLDGEGELPPV+ IAP F  RVPEGVLYCVRAAL +EFE+
Sbjct: 654 ALDLPEDLLGEIQDAFLDGEGELPPVAEIAPLFTGRVPEGVLYCVRAALQSEFEI 708