Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 645 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas simiae WCS417

 Score =  256 bits (655), Expect = 2e-72
 Identities = 139/360 (38%), Positives = 205/360 (56%), Gaps = 2/360 (0%)

Query: 9   LKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVSPLIA 68
           L+ +FG+  FR  Q   +  V  G  A  + PTG GKSLC+Q+  +L P LT+VVSPL+A
Sbjct: 5   LQQVFGFPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64

Query: 69  LMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRMLDFLR 128
           LM DQ+  L   G+SA +++S  + ++  ++  R R GE+K+L ++ ERL   R  +FL+
Sbjct: 65  LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRNFLQ 124

Query: 129 DLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEIVQRL 188
            + ISL  +DEAHC+S+WGH+FRP+YL+L      F     + LTATA  +   ++  + 
Sbjct: 125 SVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADMQAKF 184

Query: 189 HLQGAERFLSSFDRPNIFYRIVPKEA--PRKQLMAFLGERRGNAGIVYCLSRKKVDETAA 246
            +   +   + F RPN+   + P      R++L+ ++ ER G   IVY   +K  ++ A 
Sbjct: 185 AIAPGDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSERAGQPSIVYVTLQKTAEQIAE 244

Query: 247 FLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLP 306
            L   G  A  YHAGL  + R   Q RF++     +VATIAFGMGIDK ++R V H DLP
Sbjct: 245 HLNRNGIQAEAYHAGLPHDKREGIQQRFMSGRSHCIVATIAFGMGIDKSDIRNVVHFDLP 304

Query: 307 KSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAMLA 366
           KS+E Y QE GRAGRDG PSD  +      + +L+  +     ++   R    +L A  A
Sbjct: 305 KSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRRVLEELQAARA 364



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 349 GDERHKRIEQHKLDAMLALCEETRCRRQSLLAYF-DEILEQPCGHCDNC 396
           G ++H+  E  ++ AML L    RC  Q L  YF DE   Q CGHC  C
Sbjct: 507 GFKQHEVGEVARIHAMLDLFATERCLGQRLAQYFGDENAPQRCGHCSVC 555