Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 590 a.a., ATP-dependent DNA helicase RecQ from Sphingobium sp. HT1-2

 Score =  477 bits (1228), Expect = e-139
 Identities = 267/592 (45%), Positives = 367/592 (61%), Gaps = 13/592 (2%)

Query: 8   VLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVSPLI 67
           +L DIFG+ +FRG Q  ++  V  G   L +MPTG GKSLC+Q+P +   G  VVVSPLI
Sbjct: 8   LLHDIFGFTTFRGVQEQVVGRVMAGQPTLAIMPTGAGKSLCYQLPAVALDGCCVVVSPLI 67

Query: 68  ALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRMLDFL 127
           ALM DQ+     +G+ AA+L S       RE   RLR GE+ +LY+APER       + L
Sbjct: 68  ALMHDQLRAATAVGIRAASLTSV--DADWRETQDRLRNGELDLLYVAPERASGEGFRNLL 125

Query: 128 RDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEIVQR 187
           R   ++LFAIDEAHCVS+WGHDFRP+Y  L  L + FP VPR+ALTATAD  TR++I+ +
Sbjct: 126 RSAKVALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADAHTRKDILVQ 185

Query: 188 LHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVDETAAF 247
           L +      +S FDRPNI Y + P++   +QL   L    G  G+VY  +R   ++ A  
Sbjct: 186 LGIPEDGLIISGFDRPNIRYAVHPRDGLTRQLADLLAANPG-PGVVYAPTRAATEKLAET 244

Query: 248 LCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPK 307
           L   G     YHAG+    RAANQ  F+  E ++MVAT+AFGMGIDKP+VRFVAH  LPK
Sbjct: 245 LGRGGRAVRAYHAGMDPAQRAANQAAFIASEDMVMVATVAFGMGIDKPDVRFVAHAGLPK 304

Query: 308 SLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAMLAL 367
           S+E YYQE+GRAGRDG P+ A + +G +D    +Q +   E +   ++ E+ ++ A+ AL
Sbjct: 305 SIEGYYQESGRAGRDGEPAVAHLFWGAEDFARARQRIM--ELEPARQQGERARIAALGAL 362

Query: 368 CEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTGQRYGVGH 427
            E   CRR  LL +F E     CG+CDNC+    + DATE AR+ LSAV+RTGQ +G GH
Sbjct: 363 VETATCRRAILLRHFGEDPPATCGNCDNCLTPPASVDATETARKYLSAVYRTGQSFGAGH 422

Query: 428 LVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLEGYGGLRL 487
           +  VL G  T+K+R  GH+K+SV+ +  G      R + R L+ R    ++   +GGL L
Sbjct: 423 IEAVLSGAVTDKIRERGHDKISVYAIVDGDETTLLRPVSRALLVRDA--LETTEHGGLML 480

Query: 488 SDSCRPLLRGEVTLQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERDLWEALRTLRRKLA 547
             + RP+LRGE   ++R  + P+   K  ++  GS A+ +       L++ALRT RR+LA
Sbjct: 481 GPNARPILRGEE--EVRILVPPRRERKKRNARNGSDANPV----GDPLFDALRTCRRELA 534

Query: 548 EEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVL 599
           ++  VPPYVIF DSTL EM   +P ++ ++  VSGVG +KL+ YG AFL  +
Sbjct: 535 QDAGVPPYVIFHDSTLREMAEQRPATIHELGMVSGVGQKKLDAYGDAFLAAI 586