Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 609 a.a., ATP-dependent DNA helicase RecQ from Dickeya dianthicola ME23

 Score =  558 bits (1438), Expect = e-163
 Identities = 293/602 (48%), Positives = 403/602 (66%), Gaps = 17/602 (2%)

Query: 5   AQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVS 64
           A +VL++ FGY  FR  Q AII    +G D LV+MPTGGGKSLC+Q+P L+  GLT+VVS
Sbjct: 13  AMQVLRETFGYQQFRPGQQAIINAAISGRDCLVIMPTGGGKSLCYQIPALVLEGLTLVVS 72

Query: 65  PLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRML 124
           PLI+LM DQV  L   GV+AA LNST T EQQ+ +    RRGE+K+LY+APERL     L
Sbjct: 73  PLISLMKDQVDQLQAYGVAAACLNSTQTREQQQAVFSACRRGELKLLYIAPERLTTDGFL 132

Query: 125 DFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEI 184
           + L   + +L AIDEAHC+SQWGHDFRPEY  LGQ+ + FP +P +ALTATAD  TR++I
Sbjct: 133 EQLTHWNTTLIAIDEAHCISQWGHDFRPEYRALGQIKQQFPALPIVALTATADETTRQDI 192

Query: 185 VQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVDET 244
            + L L+     +SSFDRPNI Y +V K  P  QL  F+  +RG +GIVYC SR KV++ 
Sbjct: 193 ARLLDLRDPLTNISSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGKSGIVYCNSRAKVEDL 252

Query: 245 AAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLD 304
            A L ++G     YHAGL  + RA  Q  FL ++  ++VAT+AFGMGI+KPNVRFV H D
Sbjct: 253 CARLQNRGLSVGAYHAGLENDRRAQVQEAFLRDDLQVVVATVAFGMGINKPNVRFVVHFD 312

Query: 305 LPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAM 364
           +P+++E+YYQETGRAGRDGLP++A + Y   DM  L++ L+      +   IE+HKL+AM
Sbjct: 313 IPRNIESYYQETGRAGRDGLPAEAALFYDPADMAWLRRCLEEKPAGVQ-LDIERHKLNAM 371

Query: 365 LALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTGQRYG 424
            A  E   CRR  LL YF E  +Q CG+CD C+D  + +D    A++ALS V+R GQR+G
Sbjct: 372 GAFAEAQTCRRLVLLNYFGENRQQACGNCDVCLDPPRRYDGLVDAQKALSCVYRVGQRFG 431

Query: 425 VGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLEGYGG 484
           +G++ +VL G + +++R FGH+KL V+G+GK   + +W S+ RQL+  GL+  ++  +  
Sbjct: 432 IGYIAEVLRGANNQRIREFGHDKLPVYGLGKDKTQEQWVSILRQLIHLGLLAQNIAHHSA 491

Query: 485 LRLSDSCRPLLRGEVTLQLRRD-----LKPQTTAKTSSSSGGSPASQLVRAEERDLWEAL 539
           L+L++S RP+LRGE  LQL         KP+   KT    GG+         +R L+  L
Sbjct: 492 LQLTESARPVLRGEAPLQLAVPRVISLSKPRAGQKT---YGGN--------YDRKLFAKL 540

Query: 540 RTLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVL 599
           R LR+ +A+E ++PPYV+F D+TLLEM    PV+ S++  V+GVG RKLER+G  F+ ++
Sbjct: 541 RKLRKSIADEDNIPPYVVFSDATLLEMAELLPVTASELLAVNGVGQRKLERFGAPFMTLI 600

Query: 600 NN 601
            +
Sbjct: 601 RD 602