Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 440 a.a., ATP-dependent RNA helicase SrmB from Alteromonas macleodii MIT1002

 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 80/323 (24%), Positives = 127/323 (39%), Gaps = 24/323 (7%)

Query: 32  GGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVS---PLIALMDDQVATLDELGVSAAALN 88
           G D +    TG GK+  F VP + R      +S   P   ++        ++ + A ++ 
Sbjct: 38  GKDIIASSKTGSGKTFAFLVPAINRLMSQKALSRQDPRALILAPTRELAKQVFIEAKSMC 97

Query: 89  STLTAEQQRELAGRLRRGEVKMLYLAPERLVQP--RMLDFLRDLDI-----SLFAIDEAH 141
           + L       + G     +VK L   P  +V    R+ D L D  +      L   DEA 
Sbjct: 98  TGLNLTCSLIVGGENYNDQVKALRRNPHIIVGTAGRVADHLLDKSVYLNGLELLIFDEAD 157

Query: 142 CVSQWGHDFRPEYLQLGQLAELFPHVPR--IALTATADMRTREEIVQRLHLQGAERFL-- 197
            +   G        QL  + +   H  R  +  +AT D    + +  +L  +GA R    
Sbjct: 158 RMLDLGFS-----AQLKMINDYADHRKRQTMLFSATLDNIELKHMTTQL-TKGAVRVAVG 211

Query: 198 -SSFDRPNIFYR--IVPKEAPRKQLMAF-LGERRGNAGIVYCLSRKKVDETAAFLCSQGF 253
            S+ +  +I  +         + Q++ F L  R  N  IV+  +R+  D  AA L  Q  
Sbjct: 212 DSTAEHGDIEQKCFFADNVDNKDQILQFELANRTYNQAIVFTATREDTDRIAALLNEQNL 271

Query: 254 PALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYY 313
            A+     +    RAA    F   +  I+V T     G+D   V  V + DLPK+ + Y 
Sbjct: 272 EAIALRGDMLQSQRAAVMSAFARGQHSILVTTDLASRGLDLSKVGLVVNFDLPKNADEYI 331

Query: 314 QETGRAGRDGLPSDAWMAYGLQD 336
              GR GR G   +A+   G +D
Sbjct: 332 HRIGRTGRAGQKGEAFSLIGPRD 354