Pairwise Alignments

Query, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

Subject, 403 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  551 bits (1421), Expect = e-162
 Identities = 280/390 (71%), Positives = 318/390 (81%), Gaps = 35/390 (8%)

Query: 1   MSEQDLKETEITPPSGEKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHD 60
           M+++D  +++   P+GEKLQKVLARIGVGSRRDVEAWI+Q RIKVNGVEATLGQRVDLHD
Sbjct: 1   MNDKDQNDSQEIGPAGEKLQKVLARIGVGSRRDVEAWITQKRIKVNGVEATLGQRVDLHD 60

Query: 61  AIAVDGKLIKREEAAEATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGR 120
           AI +DGK+IKREEAAE+ RRVIMYNKPDGEICTRDDPEGRPTVFD++P+PKEGRWINIGR
Sbjct: 61  AITIDGKVIKREEAAESVRRVIMYNKPDGEICTRDDPEGRPTVFDKMPKPKEGRWINIGR 120

Query: 121 LDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAK 180
           LDINTTGLL+FTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGV+LEDGPAK
Sbjct: 121 LDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVVLEDGPAK 180

Query: 181 FTDIQKAPGGEGFNHWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMG 240
           FTDI++APGGEGFNHWYHCVVMEGRNREVRRLWESQG+VVSRLKRVRFGPVFLNSDLPMG
Sbjct: 181 FTDIKQAPGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLNSDLPMG 240

Query: 241 RWREMTQGEIDILAAEVGLQPVALPAMKLKAKDKMERLQRKSTRPLGRGERV-RNLRPAH 299
           RWREM+Q E+DIL+AEVGL PVA+P M  K+KDK+ER+QRKS+RP+ R ERV R LRPA 
Sbjct: 241 RWREMSQYEVDILSAEVGLTPVAMPQMNAKSKDKLERMQRKSSRPVARTERVARTLRPAL 300

Query: 300 EGAATGERPARQPREEAPRKPTRGST----------------------VAERPSE--MRK 335
              ATG R +R+P+ E  R+PT  S                        A+RP++    K
Sbjct: 301 NAPATGGRISREPQIEGERRPTAPSRQEGERAPRAPRPAPAGGRSNRGEADRPADNASTK 360

Query: 336 RPGKPD----------GDKPAGRGRGKPRG 355
           RP KP            D+P+G+ RG P G
Sbjct: 361 RPAKPAANKRPGPKLVADEPSGKRRGAPAG 390