Pairwise Alignments

Query, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

Subject, 599 a.a., LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) from Variovorax sp. SCN45

 Score =  242 bits (618), Expect = 2e-68
 Identities = 148/364 (40%), Positives = 200/364 (54%), Gaps = 24/364 (6%)

Query: 6   LKETEITPPSGEKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHDAIAVD 65
           LK   +      KL KVLA+ G+GSR ++E  I QGRI VN   A +GQR+   D + ++
Sbjct: 185 LKRVLLPEADSPKLHKVLAQAGLGSRLEMEQLILQGRISVNNEPAHIGQRIQYGDQVKIN 244

Query: 66  GKLIKREEAAEATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINT 125
           GK I R   A    RVI Y+KP GE+ T DDP+ RPTVF +LPR ++G+W ++GRLD+NT
Sbjct: 245 GKPI-RYRIAPPPPRVIAYHKPTGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNT 303

Query: 126 TGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAKFTDIQ 185
            GLLLF++ G+LAN+LMHP + ++REYAVRV G +  E  ++L  GV L+DG A+F  I+
Sbjct: 304 EGLLLFSSSGDLANQLMHPRFGLEREYAVRVLGALTSEEKQKLLDGVRLDDGMAQFGTIE 363

Query: 186 KAPGGEGFNHWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREM 245
              GGEG N WY   + EGRNREVRRL+ES G  VSRL R+R+G + L   L  G W E+
Sbjct: 364 DG-GGEGSNCWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMEL 422

Query: 246 TQGEIDIL-------AAEVGLQPVALPAMKLKAKDKMERLQRKSTRPLGRGERVRNLRPA 298
            + +I  L       AA  G Q    P        +  R +++     G G+     R  
Sbjct: 423 DERDIRALFQASGGAAARPGPQQRG-PGQDGGGNGRNGRNKKRRGNRNGGGQGGGQPREM 481

Query: 299 HEGAATGERP-------ARQPREEAPRKPTRGSTVAERPSEMRKRPGKPDGDKPAGRGRG 351
            +    GE P        R PR +   +P RG              G+P G    G+G G
Sbjct: 482 RDDGGRGEAPIPNPLGDGRPPRGDRGPRPNRGGGNG-------GNGGQPQGQGRRGKGGG 534

Query: 352 KPRG 355
             +G
Sbjct: 535 NRQG 538