Pairwise Alignments

Query, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

Subject, 277 a.a., Pseudouridine synthase from Variovorax sp. SCN45

 Score =  104 bits (259), Expect = 3e-27
 Identities = 88/289 (30%), Positives = 134/289 (46%), Gaps = 59/289 (20%)

Query: 6   LKETEITPPSGEKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHDAIAVD 65
           + E    P    +L K +A + + SRR+ + WI+ G +KVNG  A +G +V   D I +D
Sbjct: 1   MTEPSSPPSDAVRLNKRMAELKMCSRREADEWIANGWVKVNGRPAEMGVKVTPSDRIEID 60

Query: 66  GKLIKREEAAEATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWIN-------- 117
            K  K ++A + T   I+ NKP G +  + +    P V    P   + RW          
Sbjct: 61  -KAAKGQQANQVT---ILINKPIGYVSGQAEDGHDPAVVLFTP---QNRWAEDNARFFFS 113

Query: 118 ---------IGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVR------------- 155
                     GRLDI++ GLL+ T DG +A +L+     M++EY VR             
Sbjct: 114 PQQLRGLAPCGRLDIDSIGLLVMTQDGRIARQLIGEDSVMEKEYLVRVAYHGLGQPAPTG 173

Query: 156 --VRGEVDD------------EMIERLKAGVMLEDGPAKFTDIQ-KAPGGEGFNHWYHCV 200
             VR + DD             M+ RL+ G+ L+    K   ++ + P    F      V
Sbjct: 174 QLVRMDDDDPVTTNVQAVFPPAMLARLRHGLSLDGQALKPARVEWQNPEQLRF------V 227

Query: 201 VMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREMTQGE 249
           + EG+ R++RR+ E  G+ V  LKRVR G V L  +LP+G+WR +   E
Sbjct: 228 LTEGKKRQIRRMCELVGLKVVGLKRVRIGKVML-GNLPVGQWRYLAPHE 275