Pairwise Alignments

Query, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

Subject, 298 a.a., Ribosomal large subunit pseudouridine synthase B from Alteromonas macleodii MIT1002

 Score =  281 bits (720), Expect = 1e-80
 Identities = 153/300 (51%), Positives = 198/300 (66%), Gaps = 10/300 (3%)

Query: 17  EKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHDAIAVDGKLIKREEAAE 76
           EKLQKVLA  G+GSRR++E WI +GR+ V+G +ATLG RVD    I VDG L+ R+   +
Sbjct: 3   EKLQKVLANQGLGSRREMERWIEEGRVSVDGTKATLGDRVDHTAQIRVDGHLLSRQ-TEQ 61

Query: 77  ATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDGE 136
              RV+MYNKP+GE+C+R DPEGR TVFDRLP  + GRWI +GRLD+NT+GLLLFT DGE
Sbjct: 62  PICRVLMYNKPEGELCSRHDPEGRDTVFDRLPAIRLGRWITVGRLDMNTSGLLLFTNDGE 121

Query: 137 LANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAKFTDIQKAP-----GGE 191
           LANRLMHP  E++REYAVRV GEV  + +  L+ GV LEDG AKF  I  AP       E
Sbjct: 122 LANRLMHPKCEVEREYAVRVFGEVTGKTLHTLQKGVELEDGEAKFLTISGAPTPQHAEDE 181

Query: 192 GFNHWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREMTQGEID 251
             N WY+  + EGRNREVRRLWESQG+ VSRL RV++GP+ L   LP G W E+   +++
Sbjct: 182 SMNRWYNVTLKEGRNREVRRLWESQGVQVSRLIRVKYGPIELQKRLPQGAWVELGLEDVN 241

Query: 252 ILAAEVGLQPVALPAMKLKAKDKMERLQRKSTRPLGRGERVRNLRPAHEGAATGERPARQ 311
            L + V L P     M    + K++  +    R   +  +VR  +  ++ A    RPA++
Sbjct: 242 ALRSHVQL-PDETQTMVNVRQGKLDHARLSRMRRSVKKHKVRKQQGLNKRAG---RPAKR 297