Pairwise Alignments

Query, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

Subject, 669 a.a., ribosomal large subunit pseudouridine synthase B from Agrobacterium fabrum C58

 Score =  164 bits (414), Expect = 8e-45
 Identities = 122/339 (35%), Positives = 173/339 (51%), Gaps = 17/339 (5%)

Query: 17  EKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEA-TLGQRVDLHDAIAVDGKLIKREEAA 75
           E++ K++AR GV SRRDVE  I +GR+ +NGV   T      L D I VDG  I+    A
Sbjct: 57  ERISKIMARAGVASRRDVERMIMEGRVSLNGVLLDTPVVNATLSDKIEVDGMPIR---GA 113

Query: 76  EATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDG 135
           E TR + +Y+KP G + T  DPEGRPTVFD LP     R ++IGRLDINT GLLL T DG
Sbjct: 114 ERTR-LWLYHKPAGLVTTNSDPEGRPTVFDNLPGELP-RVLSIGRLDINTEGLLLLTNDG 171

Query: 136 ELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAKFTDIQKAPGGEGFNH 195
            L+  L  P+    R Y VR  GEVD   +++LK G+ + DG             +G N 
Sbjct: 172 GLSRVLELPTTGWLRRYRVRAHGEVDQAALDKLKDGIAV-DGVLYGAIDATLDRTQGHNV 230

Query: 196 WYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREMTQGEIDILAA 255
           W    + EG+NRE++ +  + G+ V+RL R+ +GP F   DLP G+  E+ +G   +L  
Sbjct: 231 WITMGLREGKNREIKNVLGALGLEVNRLIRISYGP-FQLGDLPEGKVLEV-RGR--MLRD 286

Query: 256 EVGLQPVALPAMKLKAKDKMERLQRKSTRPLGRGERVRNLRPAHEGAATGERPARQPREE 315
           ++G + +        A      +  +   P  R +       A EG    E+ A +P + 
Sbjct: 287 QLGPRLIEEAGANFDAPIYNTSVDDEEEAPAKRAKSEWAKSDAPEGKPRFEKAAGKPEDR 346

Query: 316 APRKPTRGSTVAERPSEMRKRPGKPDGDKPAGRGRGKPR 354
                 R   +    ++   +P    G KPAG+  GK R
Sbjct: 347 ------REKALGRLDTKRSDKPAGKFGAKPAGKFGGKGR 379



 Score = 38.1 bits (87), Expect = 7e-07
 Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 37/106 (34%)

Query: 284 RPLGRGERVRNLRPAHEGAATGERPAR-------------------QPREEAPR------ 318
           RP   G+R R  RPA    + G+RPAR                   +PR + PR      
Sbjct: 501 RPREDGDRPRGDRPARGTKSFGDRPARGDKPFGDRPFRDRPREDGDRPRSDRPRGEKSFG 560

Query: 319 -------KPTRGSTVAERPSEMRKRPG--KPDGDKPAGRGRGKPRG 355
                  KP       ++P E   RPG  +P GD+P G    KPRG
Sbjct: 561 DRTARGEKPFSERPFRDKPREEGDRPGSDRPRGDRPFG---DKPRG 603