Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  219 bits (559), Expect = 1e-61
 Identities = 151/451 (33%), Positives = 234/451 (51%), Gaps = 11/451 (2%)

Query: 71  RVGLMPSERRHME-LNALLGALDFPVLSIDMGGSIVA---ANRAAAQLLGVRVDEVPGMP 126
           ++ ++  E RH E L A L    F  +S +     +A   +      L  +R+ +  G  
Sbjct: 7   KILIVDDEVRHGEVLEAALAERGFEAVSTNTVAKALAYCASQPVDLVLSDLRMPDRGGAD 66

Query: 127 LARYV--EDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQSEHDDSEALAGAVLTLH 184
           L R +  E  +LP ++    + + G    VK   F     PL  + DD  A     L L 
Sbjct: 67  LLRALKHEQPELPVIIMTAYASVRGAVDLVKDGAFDYVAKPL--DLDDVVATIARALRLK 124

Query: 185 RADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGTGKELL 244
             +    R+ +  ++  R FD++   S V   V+R+   +AP  A +L+ GE+GTGKEL+
Sbjct: 125 AVESENSRLRSELEERYR-FDNLLGESAVFHHVLRQVTEVAPSRASVLLLGESGTGKELV 183

Query: 245 ARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTL 304
           ARA H  SPR   P +A+NCA +PE++ E+ELFG+  GAF GA    + G       GTL
Sbjct: 184 ARAIHYNSPRRDLPFVAVNCAAIPETLIESELFGHVKGAFTGATGVRE-GRFAAANQGTL 242

Query: 305 FLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQD 364
           FLD + +M   +Q K+LR LQ+  F  VGS + V +DVR+I AT  DL +  A G FR D
Sbjct: 243 FLDEIADMPLPVQAKVLRALQEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGTFRMD 302

Query: 365 LYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGN 424
           LY+RL V  + +PPLRE  D +  L  HFL  A+R +G  +  L P A   L +Y WPGN
Sbjct: 303 LYYRLAVFPITLPPLRERTDDIVLLADHFLAAATRDMGKRVKGLTPEAQAMLTRYRWPGN 362

Query: 425 VRQLENVLFQAVSLCDGGVVKSEHIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKA-VLES 483
           VR+L+N + +A  +  G +V    + L +      +   +L GDL   + R E+  VL++
Sbjct: 363 VRELQNCMERAAIVARGDLVGPGDLLLFEANGDTDVQSHTLNGDLDSELSRIEREFVLQA 422

Query: 484 LMGEFPSSRALGKRLGVSHTTIANKLRDYSL 514
           L           ++LG++  ++ ++++  ++
Sbjct: 423 LKDSGGVQARAAEKLGITERSLWHRIKKLAI 453