Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  203 bits (517), Expect = 1e-56
 Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 1/241 (0%)

Query: 207 IFQSSRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQSPLMALNCAG 266
           I  S   M  +  + R++AP D+ +LI+GE+GTGKEL+ARA H  S R ++P++++NCA 
Sbjct: 147 IIGSCPPMQDLYGKIRKVAPTDSNVLIQGESGTGKELVARALHNLSKRAKAPMISVNCAA 206

Query: 267 LPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGVGEMSPRLQVKLLRFLQD 326
           +PES+ E+ELFG+  GAF GA A G+ GL+E   GGTLFLD +GE+    Q +LLR LQ+
Sbjct: 207 IPESLIESELFGHEKGAFTGASA-GRAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQE 265

Query: 327 GCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNVLSLHIPPLRECMDGL 386
           G  RRVGS +   +DVR+I AT  DL  L   G+FR+DLY+RL+V++L +P LRE    +
Sbjct: 266 GEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQFREDLYYRLHVIALKLPALRERGADV 325

Query: 387 EGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLENVLFQAVSLCDGGVVKS 446
             +   FL + S +I     + AP A   +  Y WPGNVR+LEN + +AV L +   + +
Sbjct: 326 NEIAHAFLLRQSARINRTDLKFAPDAEQAIRHYSWPGNVRELENAVERAVILSESPEISA 385

Query: 447 E 447
           E
Sbjct: 386 E 386