Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 502 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  384 bits (987), Expect = e-111
 Identities = 223/515 (43%), Positives = 312/515 (60%), Gaps = 18/515 (3%)

Query: 1   MRIKVHCQNRIGILRDILNLLVEYGINVLRGEVGGDHGNAIYLHCPNLINLQFQALRPKF 60
           MRI V   +R+GI +++L LL    +N+   E+   +   +Y+  P L     + LR   
Sbjct: 1   MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPN---VYIDAPTLSADVLEELRDAL 57

Query: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALDFPVLSIDMGGSIVAANRAAAQLLGVRVD 120
            ++ GV  VK V ++P +RRH++L+ALL A+  PVL++D  G I+ AN A   L G    
Sbjct: 58  FSVQGVQAVKVVDILPGQRRHLQLDALLAAMTDPVLALDSAGKILLANPALIALYG---R 114

Query: 121 EVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQSEHDDSEALAGAV 180
           E  G  ++    D  L + +     R+    I V G   L D  P+          AGA+
Sbjct: 115 EPAGESISELFNDPALLDTLLEQGFRLPLREISVNGQTLLLDATPITD--------AGAL 166

Query: 181 LTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGTG 240
           LTL++ +RIGE++  +      GFD++   S V+  +   A+R+A LDAPLLI+GETGTG
Sbjct: 167 LTLYQPNRIGEQLSALHHDHAEGFDALLGESPVIRTLKARAQRVAALDAPLLIQGETGTG 226

Query: 241 KELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTA 300
           KEL+ARACH  S R  +P +ALNCA LPE++AE+ELFGY PGAF GA+  GK GL+EL  
Sbjct: 227 KELVARACHAISARHSAPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLMELAN 286

Query: 301 GGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGE 360
            GT+FLD +GEMSP LQ KLLRFL DG FRRVG D EV ++VR++ AT  DL ++ + G 
Sbjct: 287 QGTVFLDEIGEMSPYLQAKLLRFLNDGSFRRVGGDREVKVNVRILSATHRDLEKMVSEGT 346

Query: 361 FRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYH 420
           FR+DL++RLNVL++ +PPLRE    +  L ++F+ QA  QI   + RLAP     L    
Sbjct: 347 FREDLFYRLNVLNVEVPPLRERGQDILLLARYFMQQACAQIQRPVCRLAPGTYPALLGNR 406

Query: 421 WPGNVRQLENVLFQAVSLCDGGVVKSEHIRLPDYGV-RQPLGEFSLEGDLSQIVGRFEKA 479
           WPGNVRQL+NV+F+A ++C+  +V    + +    V RQ  GE      L Q V  FE+ 
Sbjct: 407 WPGNVRQLQNVIFRAAAICESSLVDIGDLDIAGTSVARQSDGEID---SLEQAVEDFERN 463

Query: 480 VLESLMGEFPSSRALGKRLGVSHTTIANKLRDYSL 514
           +LE+L   +PS+R L  RL  SHT IA++LR Y +
Sbjct: 464 LLETLYTSYPSTRQLASRLQTSHTAIAHRLRKYGI 498