Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 520 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  942 bits (2434), Expect = 0.0
 Identities = 472/518 (91%), Positives = 495/518 (95%), Gaps = 1/518 (0%)

Query: 1   MRIKVHCQNRIGILRDILNLLVEYGINVLRGEVGGDHGNAIYLHCPNLINLQFQALRPKF 60
           MRIKVHCQNRIGILRDILNLLVEYG+NV +GEVGG+HGNAIYL CPNL+N+QFQALRP+F
Sbjct: 1   MRIKVHCQNRIGILRDILNLLVEYGVNVAKGEVGGEHGNAIYLFCPNLVNMQFQALRPQF 60

Query: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALDFPVLSIDMGGSIVAANRAAAQLLGVRVD 120
           EAIAGVFGVKRVGLMPSERRHMELNALLGAL+FPVLSIDMGGSIVAANRAAAQLLGVRVD
Sbjct: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALEFPVLSIDMGGSIVAANRAAAQLLGVRVD 120

Query: 121 EVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQS-EHDDSEALAGA 179
           EVPG+PL+RY EDFDLPELVRA+KSRINGLR+KVKGDVFLADIAPLQS EHDDSEA+AGA
Sbjct: 121 EVPGIPLSRYAEDFDLPELVRASKSRINGLRVKVKGDVFLADIAPLQSSEHDDSEAMAGA 180

Query: 180 VLTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGT 239
           VLTLHRADR+GERIYNVRKQELRGFDSIFQSS+VMAAVVREARRMAPLDAPLLIEGETGT
Sbjct: 181 VLTLHRADRVGERIYNVRKQELRGFDSIFQSSKVMAAVVREARRMAPLDAPLLIEGETGT 240

Query: 240 GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT 299
           GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT
Sbjct: 241 GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT 300

Query: 300 AGGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG 359
           AGGTLFLDGVGEMS RLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG
Sbjct: 301 AGGTLFLDGVGEMSARLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG 360

Query: 360 EFRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQY 419
           EFRQDLYHRLNVLSLHIPPLREC+DGL  LV HFLDQASRQIGC +P+LAPAAMD+L  Y
Sbjct: 361 EFRQDLYHRLNVLSLHIPPLRECLDGLAPLVDHFLDQASRQIGCPLPKLAPAAMDRLSHY 420

Query: 420 HWPGNVRQLENVLFQAVSLCDGGVVKSEHIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKA 479
           HWPGNVRQLENVLFQAVSLC+GG VK EHIRLPDYGVRQPLG+FSLEG L  IVGRFEKA
Sbjct: 421 HWPGNVRQLENVLFQAVSLCEGGTVKVEHIRLPDYGVRQPLGDFSLEGGLEDIVGRFEKA 480

Query: 480 VLESLMGEFPSSRALGKRLGVSHTTIANKLRDYSLNKS 517
           VLE+L  E  SSR LGKRLGVSHTTIANKLRDY + K+
Sbjct: 481 VLEALYAEHSSSRQLGKRLGVSHTTIANKLRDYEILKA 518