Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 469 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  216 bits (551), Expect = 1e-60
 Identities = 156/445 (35%), Positives = 235/445 (52%), Gaps = 36/445 (8%)

Query: 98  IDMGGSIVAANRAAAQLLGVR-VDEVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKG 156
           +D   +IV  N   A+  G++  DE  G P  + + +  L ++VR ++  +  ++   KG
Sbjct: 35  VDRDANIVWMNERYAKRFGLKSADEAIGQPCEQVISNSLLRQVVRNDQPILLDIQDTPKG 94

Query: 157 DVFLADIAPLQSEHDDSEALAGAVL-----TLHRADRIGERIYNVRKQELRGFDSIFQS- 210
            + +  + P+   H+++ A+ GA+       L     + ER Y   +QEL    S+ +S 
Sbjct: 95  PLVVMRL-PI---HNEAGAVIGAIGFALFDELRNLSPLIER-YLSMQQELASTRSLLRSR 149

Query: 211 ------------SRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQSP 258
                       S     V R ARR A  ++P+L+ GETGTGKELLA+A H AS R    
Sbjct: 150 QSKYNFAHFIGTSAASLEVKRRARRSASAESPVLLLGETGTGKELLAQAIHGASSRAHKA 209

Query: 259 LMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGVGEMSPRLQV 318
            +++N A +P  + E E FG  PGAF GA  +G+ G  ++  GGTLFLD +G+M   LQ 
Sbjct: 210 FVSINSAAIPADLLEAEFFGTAPGAFTGADRKGRPGKFQIAQGGTLFLDEIGDMPLPLQS 269

Query: 319 KLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNVLSLHIPP 378
           KLLR LQ+  F  VGS+E ++ DVRVI AT +DL     RGEFR DLY+RLNVL + +PP
Sbjct: 270 KLLRVLQEKEFEPVGSNEMLHSDVRVIAATSMDLEAAIKRGEFRADLYYRLNVLPIQVPP 329

Query: 379 LRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLENVLFQAVSL 438
           LRE ++ +  L +  L++   Q       L   A+  L Q+ WPGN+R+L NVL +A  L
Sbjct: 330 LRERLEDIPALSEAILEELRSQ-----HELDREALALLAQHAWPGNIRELRNVLERAALL 384

Query: 439 CDGGVVKSEHIRLPDYGVRQPLGEFS----LEGD-LSQIVGRFEKAVLESLMGEFPSS-R 492
            D  V+ +  IR    G   P+   S    +EG+  S    RF++ V+ + +     +  
Sbjct: 385 SDDLVLDAREIRAA-IGTFTPVERASAVAAVEGESFSAARERFDRQVIGAALRACEGNVI 443

Query: 493 ALGKRLGVSHTTIANKLRDYSLNKS 517
               RLG+  +T+  K+    L +S
Sbjct: 444 EAANRLGLGRSTLYKKMVALDLTQS 468